Mercurial > repos > pjbriggs > data_manager_mothur_toolsuite
diff tool-data/mothur_aligndb.loc.sample @ 0:b90e0f2bf4b1 draft default tip
Initial version.
| author | pjbriggs |
|---|---|
| date | Tue, 18 Nov 2014 09:57:33 -0500 |
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| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/mothur_aligndb.loc.sample Tue Nov 18 09:57:33 2014 -0500 @@ -0,0 +1,19 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use a directory of metagenomics files. +#file has this format (white space characters are TAB characters): +# +# Reference Alignments: http://www.mothur.org/wiki/Alignment_database +# +#<dbname> <file_base> +# +#greengenes /project/db/galaxy/mothur/core_set_aligned.imputed.fasta +#silva archaea /project/db/galaxy/mothur/Silva.archaea/silva.archaea.fasta +#silva bacteria /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.fasta +#silva eukarya /project/db/galaxy/mothur/silva.eukarya.fasta +#silva archaea nogap /project/db/galaxy/mothur/Silva.archaea/nogap.archaea.fasta +#silva bacteria nogap /project/db/galaxy/mothur/silva.bacteria/nogap.bacteria.fasta +#silva eukarya nogap /project/db/galaxy/mothur/nogap.eukarya.fasta +#FungiLSU_train_1400bp_8506_mod.fasta /project/db/galaxy/mothur/RDP/FungiLSU_train_1400bp_8506_mod.fasta +#trainset6_032010.rdp.fasta /project/db/galaxy/mothur/RDP/trainset6_032010.rdp.fasta +#trainset7_112011.pds.fasta /project/db/galaxy/mothur/RDP/trainset7_112011.pds.fasta +#trainset7_112011.rdp.fasta /project/db/galaxy/mothur/RDP/trainset7_112011.rdp.fasta