Mercurial > repos > pjbriggs > data_manager_mothur_toolsuite
comparison data_manager_conf.xml @ 0:b90e0f2bf4b1 draft default tip
Initial version.
| author | pjbriggs |
|---|---|
| date | Tue, 18 Nov 2014 09:57:33 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:b90e0f2bf4b1 |
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| 1 <?xml version="1.0"?> | |
| 2 <data_managers> | |
| 3 <data_manager tool_file="data_manager/data_manager_fetch_mothur_reference_data.xml" id="data_manager_mothur_fetch_reference_data"> | |
| 4 <data_table name="mothur_aligndb"> | |
| 5 <output> | |
| 6 <column name="name" /> | |
| 7 <column name="value" output_ref="out_file" > | |
| 8 <move type="file"> | |
| 9 <source>${value}</source> | |
| 10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/aligndb/${value}</target> | |
| 11 </move> | |
| 12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/aligndb/${value}</value_translation> | |
| 13 <value_translation type="function">abspath</value_translation> | |
| 14 </column> | |
| 15 </output> | |
| 16 </data_table> | |
| 17 <data_table name="mothur_lookup"> | |
| 18 <output> | |
| 19 <column name="name" /> | |
| 20 <column name="value" output_ref="out_file" > | |
| 21 <move type="file"> | |
| 22 <source>${value}</source> | |
| 23 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/lookup/${value}</target> | |
| 24 </move> | |
| 25 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/lookup/${value}</value_translation> | |
| 26 <value_translation type="function">abspath</value_translation> | |
| 27 </column> | |
| 28 </output> | |
| 29 </data_table> | |
| 30 <data_table name="mothur_map"> | |
| 31 <output> | |
| 32 <column name="name" /> | |
| 33 <column name="value" output_ref="out_file" > | |
| 34 <move type="file"> | |
| 35 <source>${value}</source> | |
| 36 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/map/${value}</target> | |
| 37 </move> | |
| 38 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/map/${value}</value_translation> | |
| 39 <value_translation type="function">abspath</value_translation> | |
| 40 </column> | |
| 41 </output> | |
| 42 </data_table> | |
| 43 <data_table name="mothur_taxonomy"> | |
| 44 <output> | |
| 45 <column name="name" /> | |
| 46 <column name="value" output_ref="out_file" > | |
| 47 <move type="file"> | |
| 48 <source>${value}</source> | |
| 49 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/taxonomy/${value}</target> | |
| 50 </move> | |
| 51 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/taxonomy/${value}</value_translation> | |
| 52 <value_translation type="function">abspath</value_translation> | |
| 53 </column> | |
| 54 </output> | |
| 55 </data_table> | |
| 56 </data_manager> | |
| 57 </data_managers> |