Mercurial > repos > pjbriggs > amplicon_analysis_pipeline

diff amplicon_analysis_pipeline.py @ 11:570228bb2fb7 draft

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planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 53544cd620f81c5cfbdcb277e835f1c6da8588b0
author pjbriggs
date Mon, 18 Jun 2018 07:27:33 -0400
parents b47cf1d6fb47
children fb2af52d67d1
line wrap: on
line diff
--- a/amplicon_analysis_pipeline.py	Mon Jun 18 07:21:57 2018 -0400
+++ b/amplicon_analysis_pipeline.py	Mon Jun 18 07:27:33 2018 -0400
@@ -187,7 +187,7 @@
     # 'fasta-splitter'
     fasta_splitter = find_executable("fasta-splitter.pl")
     if fasta_splitter is None:
-        fasta_splitter = os.path.readlink(
+        fasta_splitter = os.readlink(
             find_executable("fasta-splitter"))
     if fasta_splitter:
         os.symlink(vsearch,os.path.join("bin","fasta-splitter.pl"))