comparison amplicon_analysis_pipeline.py @ 13:c87b166cbfe1 draft

planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 777167fc30406b792d0cf924753069526f8b3e5e-dirty

12:fb2af52d67d1

    if fasta_splitter is None:
        fasta_splitter = os.readlink(
            find_executable("fasta-splitter"))
    if fasta_splitter:
        os.symlink(vsearch,os.path.join("bin","fasta-splitter.pl"))
    else:
        sys.stderr.write("Missing 'fasta-splitter[.pl]'\n")

    # Construct the pipeline command
    print "Amplicon analysis: constructing pipeline command"

13:c87b166cbfe1

    if fasta_splitter is None:
        fasta_splitter = os.readlink(
            find_executable("fasta-splitter"))
    if fasta_splitter:
        os.symlink(vsearch,os.path.join("bin","fasta-splitter.pl"))
        print "-- made symlink to %s" % fasta_splitter
    else:
        sys.stderr.write("Missing 'fasta-splitter[.pl]'\n")

    # Construct the pipeline command
    print "Amplicon analysis: constructing pipeline command"