Mercurial > repos > pimarin > isescan
changeset 0:cecb2758ec26 draft
planemo upload for repository https://github.com/pimarin/tools-iuc/tree/isescan commit df153ded9cba1e4a89cf3ea554183e7344e01c5d-dirty
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/isescan.xml Tue Aug 23 10:01:31 2022 +0000 @@ -0,0 +1,90 @@ +<tool id="isescan" name="ISEScan" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> + <description> Insertion Sequence Elements detection in prokaryotic genomes </description> + <macros> + <import>macro.xml</import> + </macros> + <expand macro='xrefs'/> + <expand macro="requirements" /> + <expand macro="version_command" /> + <command detect_errors="exit_code"><![CDATA[ + isescan.py + --seqfile '$input_file' + --output 'results' + $remove_short_is + --nthread \${GALAXY_SLOTS:-7} + | tee '$logfile' + + ]]> + </command> + <inputs> + <param name="input_file" type="data" format="fasta,fasta.gz" label="Genome fasta input" help="Fasta sequence to analyse for IS"/> + <param name="remove_short_is" argument="--removeShortIS" type="boolean" truevalue="--removeShortIS" falsevalue="" + label="Remove incomplete IS elements" + help="Remove partial IS elements which include IS element with length > 400 or single copy IS element without perfect TIR"/> + <param name="output_format" type="select" label="Output format type" help="Choose an output file format"> + <option value="raw"> Raw format (txt) </option> + <option value="csv"> Coma separate file (CSV) </option> + <option value="tsv" selected="true"> Tabular separate file (TSV) </option> + </param> + <param name="log_activate" type="boolean" truevalue="True" falsevalue="False" checked="True" label="Keep the log file"/> + </inputs> + <outputs> + <data name="summary" format="txt" label="${tool.name} on ${on_string}: Summary of detected IS"/> + <data name="is_results" format="tabular" label="${tool.name} on ${on_string}: IS detected"> + <change_format> + <when input="output_format" value="raw" format="txt"/> + <when input="output_format" value="csv" format="csv"/> + <when input="output_format" value="tsv" format="tabular"/> + </change_format> + </data> + <data name="gff_file" format="gff3" label="IS annotation"/> + <data name="is_fasta" format="fasta" label="${tool.name} on ${on_string}: IS nucleic sequence"/> + <data name="tpase_fasta" format="fasta" label="${tool.name} on ${on_string}: Transposase nucleic acid sequence"/> + <data name="tpase_amino" format="fasta" label="${tool.name} on ${on_string}: Transposase amino acid sequence"/> + <data name="logfile" format="txt" label="${tool.name} on ${on_string}: Log file"> + <filter> log_activate == True </filter> + </data> + </outputs> + <tests> + <test> <!-- TEST_1 default parameters --> + <param name="input_file" value="NC_012624.fna" /> + <output name="summary" value="TEST_1/test_1.fna.sum"/> + <output name="is_results" value="TEST_1/test_1.fna.tsv"/> + <output name="gff_file" value="TEST_1/test_1.fna.gff"/> + <output name="is_fasta" value="TEST_1/test_1.fna.is.fna"/> + <output name="tpase_fasta" value="TEST_1/test_1.fna.orf.fna"/> + <output name="tpase_amino" value="TEST_1/test_1.fna.orf.faa"/> + <output name="logfile" value="TEST_1/test_1.log" lines_diff="50"/> + </test> + <test> <!-- TEST_2 with remove_short_is and raw output--> + <param name="input_file" value="NC_012624.fna"/> + <param name="remove_short_is" value="true"/> + <param name="output_format" value="raw"/> + <output name="summary" value="TEST_2/test_2.fna.sum"/> + <output name="is_results" value="TEST_2/test_2.fna.raw"/> + <output name="gff_file" value="TEST_2/test_2.fna.gff"/> + <output name="is_fasta" value="TEST_2/test_2.fna.is.fna"/> + <output name="tpase_fasta" value="TEST_2/test_2.fna.orf.fna"/> + <output name="tpase_amino" value="TEST_2/test_2.fna.orf.faa"/> + <output name="logfile" value="TEST_2/test_2.log" lines_diff="50"/> + </test> + <test> <!-- TEST_3 without logfile and with csv output--> + <param name="input_file" value="NC_012624.fna"/> + <param name="remove_short_is" value="false"/> + <param name="output_format" value="csv"/> + <param name="log_activate" value="False"/> + <output name="summary" value="TEST_3/test_3.fna.sum"/> + <output name="is_results" value="TEST_3/test_3.fna.tsv"/> + <output name="gff_file" value="TEST_3/test_3.fna.gff"/> + <output name="is_fasta" value="TEST_3/test_3.fna.is.fna"/> + <output name="tpase_fasta" value="TEST_3/test_3.fna.orf.fna"/> + <output name="tpase_amino" value="TEST_3/test_3.fna.orf.faa"/> + </test> + </tests> + <help><![CDATA[ + **What it does** + With + ]]> + </help> + <expand macro="citations"/> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macro.xml Tue Aug 23 10:01:31 2022 +0000 @@ -0,0 +1,23 @@ +<macros> + <token name="@TOOL_VERSION@">1.7.2.3</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">21.05</token> + <xml name="version_command"> + <version_command><![CDATA[isescan.py --version]]> </version_command> + </xml> + <xml name="xrefs"> + <xrefs> + <xref type='bio.tools'>ISEScan</xref> + </xrefs> + </xml> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">isescan</requirement> + </requirements> + </xml> + <xml name="citations"> + <citations> + <citation type="doi">10.1093/bioinformatics/btx433</citation> + </citations> + </xml> +</macros>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/NC_012624.fna Tue Aug 23 10:01:31 2022 +0000 @@ -0,0 +1,605 @@ +>gi|228288719|ref|NC_012624.1| Sulfolobus islandicus Y.N.15.51 plasmid pYN01, complete sequence +TTTTTAAAAACCCTGCATAGTGATGATCTCCAAAAAAGAGTTTTTACCTATTCTTGCATACTCTATTCCA +ACATATGTACTAGTGTATCCATCATTTTTTGTTAACACTCTAGCAAGGGAATTCCCATACTGGGAGGCAT +TCCTACTACTCTCCCTACCCTTTCTAGGGAGAGTAGTAGGATCCCTAATTTACCAATTCTTCAAATCCTA +CATCATACCGCTCCTAACCCTTAGCATACTCACGCTCCTACAAATCGATTTAAACATAATATTTCCCGTC +AGATTCTTGATCGGCATAATCTTCGGACTAATGACCAGCTACGCAGTTGACAATGCTGTTAAAACGAACA +ACTTAGTGTTAGGTTTAACCACAGCGGGCTGGAGTATAGGATGGATACTATCATATATAGCATATACAAC +AATCCATAATTGGAATCAAATATGCATAATCAGCAGCATAATAATAGTATCCATAGCACTCCTAGACAGA +AGAGTAAGCCTAGATAAAATCAAAATCAATATAAGCTTACCAAAAACGTCATCCATAATAGTCTACTTCT +CAGCGTTAACCCCGGCATTCACACTACAAATAATTCCGAGCATATTCGAAAAAGCACACACAACATGGCT +AATACTCCCTTCGTATCTACTTTCCATAGCTGCGTATACTATACTACCAATAATAGCAAGCAAAATAGGA +CTAAAGAGATGCATCATAATAACAACCCTAGGAATACTAATTAGTGGAATAACAACATTCCTAATAACAC +CCTACACCCTATTACCATATACCTCACTAGGACTAGGAATACTTTCACTAATACCGAAATACTTAACAAC +GAAAAACGAAAAAGCCAACACTCTGGGAATAGCCCTAAATATAGGATCAATAGGAGGACTAATAATACCA +ACGCTATACACAATAATACCGACAAGCCCAGAATCAATACTCATAATAACTTCAATAATATTGTTAACAA +TCTAAAAAATTGTAATGAGGGTTTTTAAAAACCCCAAAAGTGAAGGTGGTGAAATGATTTCGCCTGACTT +AGCAATAAAAATTCTTCTATTAGTTCCTTCAGTAATATTCTTCTTCTACAGTGCAGTATATTTAATGTTA +TTTGAGCTAAATGTACAACCTAAACTGAGCAAATTCTACAGAAATACTAGTCTAGTTTTAGCTGGAGGTG +GTATACTATTATTGACAATTTATTTAATGATTTAGATAGCATAGATGATATAATTTTAATAATATTGGCA +AATGCTAACGGAACTGTTAAAGAAATGGCAGAGAAAACGGGAATAAAAGAAGAAGCTGTATATCATCTTT +TAGAATTTCTAACAATAGCTGGGATTGTGAAGAAAGAGAATGATAGATATTCTATAGATAAAACAATGAG +AACTATAGCTCAACTTTTGATAGATTTTAAAGACGGAGATGACGTGAATTGAAGAAAATAGTAATAAAAA +CAGAACTTCCTTATAATTATAGAAAGCTTAAGGGATTTTTCATTTCACCTGGGGTGCTCAGATTATTTTA +TGACGTAAAGAGTGTAGAAGTTGCAGGGAATTTATCATATATTATTAACAACAAGTACAATGCAATAATG +TATTTCAGTAATGTTGATATTGTATGGGAGATTTATAATGGTAGATTAAAGGATAAGATCTCAGTATGGT +TATATCCAATTGGTGATAATACAGGATTACACTTGAAATTCGAAACTAATAGAATACTCCCGCTAAAGAA +ACCTCTAGAAAATGAAGTCAAAGCAGGAGTAGAATTGCTAAAAAGTTTGTTAGATGCTTTGAGGAGGTTC +TGATGAAGTTAAGAACCCATTACATCTTCTCAACCGGTTTATTGACGCTTCTGGACTCTGTACTCTTTCA +TGAATATTTTTACTACGCTTTAATCTTGAGCGGAATAGTTTCGGTAATAGGTAATTCCTTGATTGATAGG +ATTGGCCATAAGGAGATTGCCACTAGGTATGGGTATATCCCGGTAAGGACACCTTTAACCCATACAATTC +CTAGAAGTGTAGTTTGGGGTATTGTCTCCGTAGTCCCGGTCTTTATTCTCTTATTGATTTATTATTATGG +GTTTAGCTATCACGAGTACTATTTCTCCCTTAGCAATAAGGTGGTGTTGTTAATATTGTTAAATGGTGTA +GTTGTTGGGCCCTCTCATTTGTTCCTGGACGTATTTACGGAAAGGGGAATATATCATAAAGTAAATGGTA +AGTGGAGGAGATTCGCATTGGCACACTTCTCCTATGATAACCCCTTAGTAAATGGATTAGCAATCTTACT +AGGAATTATAATGCTGCTAGCAGCACTTTATCTACATAACTACCATTATTACAACTATTATTTCTAACGA +GATAATAATAGTATAAAGATAAAAACAAAAAAGTTTTTAAATCTGTTTTTACAGAAGTAGAAATGGGGGA +TGAGGGGATGATGAGTAGGGTCAGAATTGACCTATGATAGGACACTCGGCAGCTGACCTGACCCCCTCAT +CCCTAATTTATTCTTACCTTATCTAACTATTAAGCTTTTCTTCTCATTGAATTTTGAAAAATTGAGCAAA +GAATGAGGTTGGATCCTAACGTTAAATTTACGACGTGAGAAAAATTCAATAAACTCCCCAGTTTGCTAAG +AAAAATTCTTTCTTCTAATTTCTTAATCTCATCTAATTTTGTATTATTAGCTAATAATGTACAATAAATG +CAGCTGAGGAGTGATATGATGCAACATAGATACGCTAAACATTCTCTATAATAAACTGAAATATGATAAT +GTATTCGAATTGAATTAAGCATCTTTATAATTAGGCAAATTTGTATAACACAAATATAAGTGTGCGTAAT +TATTGCAGAAATAGTTATCAAGACACTTGTTAAAATAAAAGAAATGATGAGAAGAGTTTTATTTCTCATA +ATATTATAAATTTTATTTAAAAAGCTCAGTTGAATTAACTCCAGTTTACTCTACAAAAATTCAAAGTAGT +TAATCCTGCACGGATCTCAAATTTTTTAGTTAAAAGAGCAAGGTAATGCGATAATGACCATAAATACTAC +ACTTTGTTAACCCTACTATTCCCAGTTTGGGAACTCATTTTCAGCCCCCTTCTAAGGAGGTAACACTTTG +TTAACCCTAGTTAAGGTTTATTAAGGGAAATTTCTCAATACAATTTTATGGAAGTTAAGATAGAGAAACA +TAAGTCAAGGTTTACCATTACACAATTAATTTTAATGGCTATGGCTAAAGCTCCTGGGAGCTGCTGTAGT +TTGGAATATTTACATGAGAAAACTGGTGTTGATAAGAAGGAGCTGCTAGTATATCTAACAAGGTTAGCCA +AAAGAGGAATAATAGAAAGGAAATGGCATAAAAGTAGGGCAGGGAAAGAGAGAATGTATTGTCTGAAGTA +TAAGGAGGATATACTATGAGCCCGCCAAATGATAAATTTTTAGAATACGCTAAAGCGCTTTTAGAAACTG +CAGAATCTGATTTAGATGCAAGTAAATTTCTTTGGGATTGTAATTATCAAGCTCAGTCAGTGTTTTATCT +TCAGCAATCAACCGAGAAGATATTTAAAGCGTTTAGGAGCATGTATCAGTACCTCTTTGTAGAATTTCCC +GAATTTATTACAGAGGAACTGATAGCTTCAAGTAATAGTAGAGTTACTAACTTGATGCCCTATCTTACAC +TGTTAAATTTAAGGTTAAAAGAGAGAAAACTGAATATTAAAGGCCTGGAAGATTTACTGAAAAAGGAATA +CTCTCATGGCTTAAAGAAAGGATTAAAGGGCGAAATAGATGAGTTAAAAAAGGAACTTGAATATGATAAA +GTTATTTTAAAGGGTATATTTTCTCAACTACAGTATACTAATATAACAAATAATATTGATTCTGCAATAT +ACTCGCTTATAAATAATTTATTATCACCTCAAGGTAACCAACAGAATATCGAGAAAGAATTAAAAGATAT +AGAGGGAATCATTGAGAGTATTAATAATGTAACTTCGTTCCTTCAAAAATTCGTGGGAGAAATTAAAAAA +CAACCATCAAGTATACCCTTACAAAGTTCATCCAGGAATAGTAGTAATTTAGTAGATATTATTTTAGACG +AAGTTTTACCTTCTATACTTACCGTTTTAATATTACCATTTAAACTATATAATATAGCGTCTTATCTTGC +TCAGTTTGAAGAGAATTCAAGATATCCGCAAATAAATAACGGAAACATTGAAATTCCACAAGATATAATT +CGCAATTGGTCTAATAATTATTCTAGTATTTACGGTAATTTATATGAGGTAATAAAAGAGATTCTAAATA +ACTTTAAGAAAACTGACCAATTTCTGCTAGATATTCATTATAGAGTTATTCAGAGAAACTATTCTATGGA +TAGTATACTTAATGATATTCTTGGTTTCATAGACTTTATAAACAATATTTTTCCAATATTACTACAAAAA +AATATATTACAGAAAATAATAAATATTATAAATAAAGATAAAATAGATGAAAATGATATTGAACAATTAG +CAAATGAATTAATCAAAACACTGGAAAAAGTGATCTAAAAGGAAATTAAGCCTAACATAAACTGTGGGAT +TCGATAGTTTGGAACGTTTTACGTATTCTACTACTATTTTATTCTACTTTTCTTTCATAACATAATTCTA +CTTCTACTTCAACGTGCAACAGAAAACGTTTCTTTTCAACGTTTTACTGAAACGTTATCTAGCCTGTCGA +GCCCCTGACCCGGGTTCAAATCCCGGCCGCGGCGTTAATTTTCCCTTAAATTGAAAGAGAGCTACGTTCT +CTTTATAAAGGCGTAAATGGAACAGTAATCCTTATTTTTGGAACAGCGTCACTTTCTTATAAGTAGGGTA +GAAATATATGCTAATTGATATTTCTAAACTGGACGAGCAACAAAGGAAGAGAATTATTAAGAAGTTAGTA +GAGAAGTTGGGGTTATCTCAAGCTGCAAAAATGCTGGATGTCGGTAGGAGTACTTTATATAGATACGTTA +ACAGTGATCAGAGTATTCCTTTAGACATTGTGAGGAAAGCTGCAGAAATGTTAGCTTCAGACGAACTTTC +GGACGCAATATACGGGCTGAAAGTAGTTGACGTTGATTTTACTACTGCATTATCTGTAGTTGTTAAAGCT +ATGAAAGATGAGAAGTTCCGGAACTTTTTCGTTTCGATACTTTATCAATATCTAGGAGACTATTTGAAGA +ACGTATCATCAACATACATTGTTACTGAAGAAGACGTGAAGAAGTTTGAAAAATTGCTCCAGGGTAAGAG +TAAAAGCACTATTGTCATGAGGATGAGGTATCTTAGGATAGCGCTTACAAAGTTGGGATATGAGTTAAGC +CCGGACAGTATCAGAGACTTAATAGCGGAGTTATCTGAAGATAGCAGCAATGTAGCCAGACATACCGCGA +ATTCCTTGAAACTATTTATCAAAACAGTAGTAAAGGAGAAGAACTTGCAGTTAGCACAGCTGTTATATAA +TTCGTTCAAAGTTCCTAAGTCTAAGTATAAATACAAACCCCAACCGCTTAGTTTAGAGACGTTAAGAAGA +ATCTTTGATAATATAGAACACTTAGGTGCTAAAGCTTTCTTCTTATTGCTATCAGAATCAGGGCTCAGGG +TAGGAGAAGTATACTCGCTTAAGATGGACCAACTAGATCTGGAAAACCGCATAATAAAAGTGATGAAAGA +ATCAGAAACCAAGAGGGCCTATATTTCCTTTATCCATACAGAAACTAGGAAGTGGTTACAAGAAGTTTAT +TTCCCATATAGGGAAGAGTTTATAAGGACGTATGAACACGTTGTAGGTCATATAGGAGCTGATGTAGAAG +CGTGGAAGCAGAAACTGTTCCCTTTTCAGTTAGCGGACTTAAGATCTTCAATAAAAGAAGGGATGAGGAA +GGTTCTGGGAAAGGAGTTCAGACTTTACGACTTGAGGAGCTTCTTTGCCAGCTATTTAATCAAAAACGGA +GTATCGCCGATGATAGTTAACATCTTACAAGGACGTGCTCCCCCTGCTCAATTCCAGATACTACAAAACC +ATTATTTCGTGATGAGCGAGATAGAGCTGAAGAAGATATTTGATGAAAAAGGGCCTAAGCTGCTTTCTCC +AAAATAAGGTCTATTTCTTTACCTAAATACTGCTCCCAGATCTGTTTCAATGAAATGGGTAGGGTAAGTA +TAAAGTAGTTTCCGTGCTTATATAGGCTCCTTAGGCCTATTAGTATTTCACGCTGATCAGTTATAGCTGT +GACGCTCCATTTTCCATGGCTTAAATACTTATCGAAACGCAGAGGTAAATAAACGTAATAAATCTCCTTC +TTTCCGCTCCTCATTTTTGATACCGTAACTCCAGGTATCAATAACTTACTCACTTCGGCCATTAGATTCA +CCCCTTAAACTCCCCAGTTTCTTCCTTAATCTTCTGTAAAACTGCCTTCAGATGTAGGTCTTGTTTTTCT +CTATCTCGTATAGTCAGTGCAATCTCTATAGCCCTCATTAGAATATTATTTTGTCTTCTCAGTTTCATAT +TTTCATCTTTTAATGAAATGTTCTCTTTCTGCAATCTTTCATTCTCTCTTTCTAACTTTTGCAGCTTCCT +CTCTAAAGCTGCTATAGTATTCAATGCTTTACTATACTGAATTTGCAGCTCTTCGTTTTCTTCAATGATC +TCATTTATTGTCATGTCTTATCGCCCAATCGTCCAGGGTAGTTTGTCTCATCTTTTTCTCCTTATTCTTT +TTAGTCCATTTTTCTGCATAAGGGCAAGAAAGACGATGGGGTCTCCAATCTGGGTCAACTGGAATTTTAT +AGCCCTTAACATGCCTAACCCAGTAGATTTTCTTATGGCAATATTCGCACTCTGATTCCTCAAATGCCTC +TACCCAGTCGGGTATGTCTGAAGTCATATTTCCCTCACCCTAACTCCATTGTTTTTCTCTTCAAAGGAAT +TTAGTCTGTAAACTCTGCCTTTCCTGCAGCTTAAGTAAAACTTTATTGCGGTCCTAATTACCTCGCTTCT +CTCCTTAGCGTTATTAATGCAGTATAAGTCTAGCTGCTGTAACAATTCCTCCTCTAGTTTAAATGTAACA +ACCCTCATTCCTTTTCACTCTCGATCTCTTCCCAGTCTACTTCCTCTCCTTCTTCTTGGTTCTTTTTCTG +CTGATTCTTACTTTGCCTGGTTTTTGCAGCTTTTTCATCTGCCTCTATGTATTGTTTAGCTAAGAGTGCT +AGAATGTAATCTAATCTCTCTTTAAGTAGAGCAGCTTCAGCTGTTGAGAGATGGAAGAAGGTCTTTTGAT +TCTCAGAGTGTATAGACAATAATAAACTCCCTTCTTCGGCGAAATCTTTAGAATTTATTTCAACATCATC +AAATCCTAATTCGAGAACTTTCACTTTCTTATTTTTATCAAAGTGGGCTAACCGTAGGGCTTTTCTCATT +GAATAACACCTGGAATCAATACTTTTCTTTCGAATTTCCTACAATAGCTTACGTCTTCTTCTAAGTCTTC +AGTAAAGCTAGGATCATCATTAGCAATAGCATTGAAGAATTTGCAAATAAGCTGCTGACAATCTCCTTCT +AATTGCTGAATGTTGTCTACTCTTCTGAACTTTAACCAACAATTAATGAATCTGTCAAAATCATTCATTC +TTCTCACTCTCGACCTCTTCTATGAAGTTCTCAATGGCCTTCTCTGGATAGAATATATGGCCAATACTAG +GAATCCATAATGTAAGCTCAGTTTTCTCGTTGAAAGAGGCATAGAATGGAATATGTTTTTTGCCTATCCT +CAGAAATCCCTTTAACGTCTTTCCATCTCTGACCGCCCACACTACCTTAAGTTCCTCTATGTTTACTAAC +ATAAGATCGTTAGAATTGATAAATTCTTCAAATCTAGCAAATATCTTATCTATAATTTCCTTCTCACTCA +TTCTTCCTCACCTTTAGACACCAAATATCCAATCCGCTGCCCAGGGGATCTTCAACTTCTTCAACTGCAG +CTTCTGCTCCTATCTCATCTAACCTTCTAAGAGCCTCTACCTTAGAATAGTAACATTCTTCATATCCCTT +TTCCTTCATCCAATTAATGAAGTATTTCTCTTCATCTAGATTTTGCGGTAAACTCCCCAGTTTATCGTCA +GATTTTGATACCATTTGCCTAAAACTTCTCAATAACATAGAATCTCTTTTCTCTTCAATTAATTGTAACT +GCTTTTCATAATAGCATAATTTTGTTCCAACTTCTGCTTCATCATAGTCTAAGCCGTATAGCTGAAACTC +TTCCATTGCACTTATCAACTCGTTAATTTCATGTAATATCCTCCTTGCAGCTCTATCTGCAGTTAGTTTC +TGAGCTTTGCCGAATAACATGTAAGCTTTCTCTAAGTGCTGCTGCAAAGTAGTAGCTTCAGTCATTCTCC +CACCTCAGCAGCATCTATAGCAAAGCACATTCCATCAGAAGCTTCCTTTTTTGCCTCCTCCTCGCTGTCC +GCGTACACGTATGCAAAACTTAATTCATCTGGTCCTCCTGCGACAACGTTTAAACATTGCAACCTTACTA +AGTAGAGCTTTCCAGTCATTCCTCCTCAGCCTCCATTCTTTCAATTATTTGTAGAGCTCTCTTTGCCTTC +TCCCTGACTCTTTCAATTAGCCATCTTCTTGCTTCTTCATCGGCTTCCACTATCTGTAATATTCTTTCGT +CACTGGGCGCATAGCCGTTGAGAAACTTATAGTATGCAGTTTTGCTCAGCTTCTTTTCTTCTATCTGCTG +TTCGAAATCTTCTCTGAATTCCTTTACGAATTCTATCTTATCTTCTCTGTCCAATAAACTAATTAAAAAA +AGAAGATCTTTCTCCCCATCAACTGGGGAGTTTTTTTGAGCCATTTCAACTAAACTCATTTTCTTCATTC +TACATAGTATGCAGAGAGATATTTAAACTTTTGCATTCAACATAGAGTGCAGAGAATCTCAAATAAAAAA +ATGTTATTTACCAATCTCTTTTAGAGTATCGTTTAATTCTAATAATTTTTCAACTACAACCTTGCCAGTC +TCCGTTAACTTCACTACCTTCTTAGCAGTTCCTACTGAAGTTTTTTCTTCTCTCACCACTATTAACCCAT +TCTCTTCTAAAATCGGTATCCATTTCTGGATTGTATGCCGTCGTCAACAGTTTCCGATAAACCGTGAAGT +TTATATACTTTGTATGTAAGTTTAACTACAATGCTGAAACCTAAGGAAGTGTGCCAAAAACTAGGAATAT +CATACCGCACACTACAGAGCTATGTTAAGAAGGGTTACATAAAACCCGTGATACTACAGAGTGGAAAATG +GAGGTTTAAAGAAGAGGATGTCGAAAGACTCATGGGGGTTGTTAGGAAGAGGAAAGTAGTATTATACGCT +AGGGTATCATCAAACACACAGAAAGACGACTTAATAAACCAAGTTAAGTACCTGGAGGAGAACGTTAAGG +ACTACGACCAAGTAATAACAGACATTGGTTCTGGGTTGAACATGAAGAGAAAAGGATTCCTCAAGCTATT +GAGAATGATACTAAACAACGAAGTATCGAAAGTTGTCATAGCCTACCCAGACAGACTAGTTAGGTTCGGC +TTTGAAATAATAGAGGAGGCATGCAAAGCACACAACTGCGAGCTCGTGGTATTAAATAAGGAGGACAAAA +CACCAGAGCAGGAACTAATCGAAGATTTGATCTCTATACTGGTATCATTTAGCGGAAAGTTGTATGGTAT +GAGGAGCCATAAATATGAGAAGGTGAAGAAGTGTGTCGAAGAGCTTAAGGCTTAAATCATTCCAACCGGA +GGAGGAATACGTTTACCTAACTTACTCCCTGAAGAATAATAAGAAGGTGAAGAGCAAGATATTACTAGAG +AACTATAAACACCTACTACAGAAGGCTTTAGACTGGTTATGGGAGAGGACTAAGATAGAGAGGAAGGAGG +TCAAGAAGGGCAAGAAAATTTTCGCTAAGGTTAAAGTAACCTTGCCAAAGAAAAAGGAAGTTTACAAGGT +GTTGAGGGATGAGTTAGAGAAGGTTAACAATCTAGCTTCACATTACGTTGACAAAGCAATAAATGATGCT +TACTCAATCTTGAATAGTTGGAGGAGGAGGGCTGAAAAAGGACAAGCGTCATTAAGGAAACCTAGATTGA +AGAAGGTTTACGTTAGGGTAAAGTCGACACTTAGAAAGGTTGAGGGTGAGAGTGTAAGGATTACAGTAAG +ACCTTACGAATACGTCACCTTCTCATGGTCTCACAAATGGTTTTCAAGGAGGGTTGAAGGGCTTGAGTTG +GGTGAGCCAGTAATAAAGGAGGATAAAGTTCACCTACCATTTCGTTATAAGTTACCTTGGTTTACTCCCC +TTGACTTTCTATCTATTGATAGTAACTTGTACACATTAGACGCTTACGATGGGGAGAAGTTCGTCACATT +TTCTTTGAAGGAGTTGTATAGTTTGAAGTTCGGTATGGAGTTGAAGAGGAGTAAAATACAGTCCTTCGCT +TCTAAACACGGTAGGAAGGGGAAGGTATTGTTGAGGAAGTACTCCCACCGTGAAAGGAACCGCGTGCTTG +ATTATGTTCACAAGTTTGTGAACAAACTGTTGGGAATGTATCCTCTCACTATGTTTGCTGTCGAGAAGTT +GAATAAGCAGTCAATGTTCCAAGACGCTGATGATAAGCTGTCTAAGAAGGTTTCAAGGACTGTATGGAGG +ACTATACACCGCGTGCTTAAATACAAGGCTCCCCTTTATGGTTCTTTCGTTAAGGAGGTGAACCCACACC +TCACATCTAAGTCCTGCCCCAGATGTGGATGGGTTTCCCGAAAGGTCGGCAGGATTTTCAAGTGTGAGAG +GTGTGGGTTCACTCTAGATAGGCAACTAAACGCATCTCTCAATATTTACCTCAAGATGTGCGGGTTTCCC +CACCTCTTTCTTACTCCCACTGGGAGTAGGTGGATTGGGGTTATCCCGCTAAAGGGGCGGAGGGGTATGA +ACGGGGCGTTGCCCCGCGACTCTGGTGAAGCCCAAGGGCTGAGGATTGGATACAAATTCATGAAAATTCA +ATGAAGCCCAAACCCCAACTCATTTGGCTAATTTTTACCAGATCCATTAAGGATCCCTCACCCATCATGT +TAATATATAGTAATATTTGCATAGGAGTTGACAAAATATCGAGAAGCTTTTTATTTATAACAAGTTCACT +CATTCTACTCTCACTACATAATATAGAGAGTAAAATTTTAATAGTTTCGCTTACCAGTGCCCTCTGTTCT +GCAGTCTACACAGAAAGCAAACTTTTAATACTTTCTGCACATAGTATAGAGTGATGAAAGTCTACCCTAT +CAACGCTAAATACAAGGTACTTATAGTGTTATTGAAACTTGGAGGAAGCGGAAAGTATAGTGATATAGAC +AGAATGATGCGTAATTCTAACTTACGCTTCTTCATAGAACAATTAAGACAAGAAGGTTTTATTGAAGACA +GATATGAGGGAAATAAACATATAATAAAGTTAACAGAGGATGGAGAAAAACTCGCTAAGAGATTAATGGA +AGCTGAAGAGTTCGTAATGATGAAAATAGCTCAAGCGAGAGGCCAGATTCAATGAAATCCTTCTTTTTCA +TTTTTATTATAGTTATTCTCTATTTCGTTCTTCTTCAATTAGAATTCTCTATTGATAGAAGAGAACGGTA +AACTGAGGAGTTTAAGGTGAGAAAATGATTATCGGTATGGGAAAAAGTCCAGTAACTGCAATTCTGCAGC +AATACAGCTATATCTGTGCATATCCTTGCTTCTTTGATAACAAAGTATTGCTGACTGAGAATAGAAGCAG +GGCTTATATCCAGTACATTAAATTATTAGTAAGGCATTATGCAAAATACGGCAGGGCTCTTAAAATCGCA +ATATGGCCCGACTATACTCCATTATATAAGGTAGAGAAAATAGCAAACATATACTTGTTTAATAATATAA +GCTTCATAGTTCCTATACACGATTTATCAGAACTAGAGATTGTAGATGAACTAGTAGAGAATGGGTTCAG +GGTTTTCGCGGGTTATGCTTCCGATAAGAAGCTTAGAAAATATGAACTTGATGACTTCAAAGAAGTAGCA +AATTACGACCGGTGGTATCTAGGAGTATCATCTAAGCATGAGGTAAGAGAGGCAGTACTATATAATTTCC +AGGGTTTTGACATAACAACATTTCTCTTTGGAAGACATGAGGATAGAAAGGACAGCAAAAAACTTGCATC +AAATATACTGAATTTCGTTAAAGAGATCAGTAAGGTCAAAGGCAAACAAACTATTCTTTACGATTTCTGC +GGTAAACTGGGGAGTTTAACGGGTGAAAGACGGTGATAGGCGTTGAAATAACTCCTAAATCCTCCAGGGT +TATCAACACCTTGGCCTTTCTGCTGGAGAACGGGAGCTCCTTCGCTCACCAACTATCTCAAATCATGAAC +ATGGACTCCAGAGAAGTATACCCCATGCTGAAGACCTGGATCCTAAAGGGAGTTGTAACGGTATCAAAAC +AGGGTAGGAGGAACGTCTATTCGATCTCCCAGAAATTCAAATCTTTAATCAGCAGTGTCGTAAAGAAGTA +TTCTTATAAGGGCAGGGAATTCATAATAGCTAAGGCTAAGGAGAGGTATAAGAGGTTCTTAGGGAGGGAT +CCGGACCCGGAAGTATTAGCAGTAATAGAGTACTTTGTAGATAAAGCACTCTCTGGAAACCCCTACGTCC +AAGGATCTCAAAACGAAAGCGTTGCAGAGTTGTTGGCCAGGGTACTGAACATTTCCTTATATGATATTAA +TGAAATACTGAGGGAACTAGTCCAGGCTAACATCTTATATGTTTGGAGGAACAGAAAGGCAAGGTTAGAC +TCTTCCCTTACGGCCTAACTGCCTTACCTAAAACTATGAGTAATTTTTCTCAGTCTCGTAATAAAAGTTC +TAACTAGCGTAAACTCCCCAGTTTAATTTGTAAAAACTCAAAGTAAAAACAAACTAATTCTTTGAATAAA +CTCCCCAGTTTATTGAGAAAAATAGAAACCTCTCTAAAAAGAGACTTGCTATTTATTACTACTACTCAAA +CTTTCACAAAAAATAAAAACAAAAACAAACGTTCTTACACTACTTTCAATTTTACAACTTTTTACTTAGG +CTAATTTTACGCTAAATTATAGCTAATTGAATTTTTTGTTTTATTTTTAGAAAAATTTTATGAAAAGAAA +GAAGGCCTTACATACTTCTTTTTACTGGGCCTAAGCTTTTTCACTCTTCTGTTTTTCATTCTCAGAACTC +TTAGTAGTAGTTATTACCAGTAGTCGAATTTTTCTTCAGTAAACTGGGGAGTTTAATTCTATCTCAGCTA +TTACTAAAACTTTCTTACCTATTAATTTCTCCCCTATCTCTTTAGGAATAGAAATACTAAAGTAAGGAAT +ATTTTCTTCTCCTTTTCTGTAATATTCCAAAGAAAATATCTTCACATTACTTAACTCTATTTTCTCTTCA +TTGGTAACTATTGTTACGTTTTTTAATATTTTTCTCTCCTTAAGTATGTTAGAATACTCTATAGGAAAAG +TAACTATATAATAAGGATACTTAACCTTCTCTCCCTGACTGTTAATCTTTACGTTATACTTTACCCTTAC +TTTTAACTCCTCTTTAATTATCATATGTATGGATATTTTTAATTTTCCCTTATAAATCTTTCTTTATTTT +AAGAGAGATTCCCTTCTAAATTATAGAAGAATCTAAGAGAGAAATATTTAAATACTAGAAAGTAATAACT +ATACTTGTGAAAGAAAAATGGCAAAAAGAACAAATAAGACAAGAAAAAGCAAAAAAGAAGAAGATGAAAT +GATAGACGAAGTACAAGAAAAATTTGGGGAATATTGCTCTGACCCAGAGAACTACACTGATGAGGCTTGT +GAAAAGTTATTTTAATTTTTTTTTTTAAAAAAACTTTCTAAGAATATAGCATATAATTTTCTTATTGTTA +TAATTCTCTCTTAGTACAGTAGTTTATTTAGGAGAGAAATATTTATATATTAGTTTAAAGAAAGTATAAT +TGATGACGGAAAACAAAAAGAACAAAAAAGAAGTAAACATGACATTCATATCATTTCCTAGCAAAGAAAT +TTTTGAACAAATATATAATGAGCTAAGTGAAGACGGTAAAAAAGAATTAGATAGAATGATGAAAGAAGGT +AGAGTAAAGATATACTAATTTTTCATTTAATATTTTAAACTTTTTCCTCAATTTGCTAGCATTTTCTCAA +TTTCTTCTCCTATCTTGTCGTCTAATTTCTGAATCCCTGGCATTGGCTTGAAATTAAACTTCTCCTTCAA +TACTCAAAATTGGGAGAAAGAGAAGAGATAGAAAAGAAGAATTTACCACAGAATTGTGAGAAATTAAGGC +AAAAAAGTAGTTTAACTCAAGATTGTGAGAAAAAAGATAAAATGAATAGGGGGTTTTACCACAAAAATGG +GTAAAATTTCATTCTCACTAAAAATATATTCAAGTTATAATAAAAAGATTATTTTAAAAATTCATCTAAA +TTTAATTCGGATTTTACAGTATATTCTGGATATTTCTTATACACATAGGATAACAACTCCTTAAGGTCCT +TATTCCCAAATCTATTTATTAAATCGTTTACCGCGTTGGCGATATCTTGATTTACCTGCGGTAACTCCTT +AGATGTGATTAAACTCTTATCTACGTTATCTTTAACTTCCTTAACCTCTATCCTATCCTTAAGCTCCTCA +AGATCCTTATAAAGTTGGGGAGTAAAAGGACCATATTTGTATGGTTCAAAATTGTAAGCTAGATTAATGT +TATATTCCTTTTGAAGGAGGAATAGATACTTCATTAACTCTGTCATATAGACTGGCCTACCTTTAATCTT +AGACGCTTGATAGACTAAATATGGTATTACTACAGATCTAAGTAGGATAATTTGCCTCCTCCAATCCTCA +GTTAATTTCCCTGTTAATGCTAACCTAAGAATAGACTTATATAGAGTATTTGCCTCATCTTCTAAGTTCT +GTAGGAAATCATTAAATCGAATAATAAGTTCATCAACCTTTTGAAGTAGTTCTACGATCTTCTTTTGTTC +CTCTAGGGGAGGTAAAGGAATTAGTAAATTTCTTATTGTATCTAAGTTAAGATTCCACTTCCCTGCTTGG +TTTTTAACCACTTTCTTAAAAGATCCGTTTAGATGATACCATGAGAGTAAATAATATATATAATATGGTT +CCACATCCTTTGATACAATCCGTATTGCCGTTAGATGATTACTAAAGGTTATCTTTTGATTTAAAGGCAT +ATCAATAATACCAAGTTTCCCTATATGATCAATACTACCATTAGTATTGACCAATACGATATCCAAATGC +CTGAGCAAATACCTCTCAATTTTTGGAGATTCAGGTATATATACAATTCTATGAAAAACAATCCTATCCG +TTTCATTATCAATATTATCTGGTCTTAAATGGATTACTTTACTATTCTCATCTCTTTTCCTCTCTGAAAA +ACCAGAACGTATAATAGCAATTTCATTAAGTCTTCTTACTTCCCAATCCTTAGGAAATTCGCCAATATCA +GTCTCAACATAATCTCTATGCCCTATACCTTTAGTCAATAATTCCTTTCTTATTACTTTCGTTATAGTTT +CTGTAGAATTTCTAATTTGAATAATATAATCCTTTAAGGTGTAATAAATATCAGTGGCCTTTTGAAGTAG +TTCTACGATCTTCTTTTGTTCTTCTAGGGGAAGTATAGGAACTGAGCTATTTAAAACTATTTCAAGTGTA +AGATTGGGTTGAGTACCCTTTTTAATAAATTTACTCCAATAAGGTTTGAAGTATAGATACCAATAATATA +AAAATTCTGTATCTATAATATTCTTATTAGGTATTATTCCTATAATTGCTTGATTTGTCGCTACTGGTAT +TTTATTAATTGCAACAAATCCTAAAGAACCATAAATTGTTAATAGTAAAGAATCCTTTGGAACTATCCAA +GCATTAGAATTTTCTAATCCTTTTTCAGTAATAAATTCCTCAGTATTGTATAGATACTTACCAGATTTCG +TTATATCTTGTATCTTTGCAAATGGAATGTTTCCGTTCCAATATTCAGGAACATTTCTTCTGGGTGTTCC +TCCAGATTTTGCTTTTATTATAACATCTTTTAATTTTCTTACATCCCAATCCTTAGGAAATTCACCAATA +TCAATCTCAACATAATCACTCATTTTCATCGCCAATGCCTAAGATCTTCTTTAACTCATTCAACCTTTTC +ATAGCGTCACTTAAGTTAGTCTCCATTAATTCTATAAGTTGTTTGGGATCTGCATTTTCTTCCTCTAACC +TGACTTTCCTATATACGTTAATATCTAATCTATAATCATGTTTCCTTATCTCTTCAACATCTACTACGAA +GTACTGTTCAGTTTGAGGTATTTCCTCTCCTCTCTTAAATTTCTGATAAATTTCTAGAGCTAAAGGCAAG +TCTCCGCATCCATCTATATCCCCCTTCTTATCACAATCCCCTATAGGTTTCCTAGTCGGTTTAAGTTCAT +AGCCGTCGCTTTCTATGTTAAAGAAAAGTACCTTATCTGTAGTCTTTTCTCCCTTGTTAGGCCTTCTAAA +GACTAATATATCTGTTTTAGCAGCTGAGTAAGGCAAGAAAACCCCTGCGGGTAATGAAAACACAGCTTCA +ATCTTGAATTTATCAACTAAATCTCTCCTAATACCTTCATAGTTCTCGTTAAAGAGGAGGCCTTCCAGCA +TTACTGTAGCTACCCTCCCTCCAGGTTTGACCATGTCCATTATAGCTTGAATGAAATAAGTTTCAAATCT +CTTGAACTTATACTTAAAGTTACCAGTAGGTTCACCACTAAATGGACCAAAAGGCGGGTTAGTGGTTATA +ACGTCTGCCTTCTCCTTATATGCACCTTGGACTGAGCCAGAGAGAGCATCTAGGTTCTCAAAGTTCGATG +AGCCGTCTCCATGAAGCCTTAAATTCATTAGCCCTAACTTAAAGACATCTGGAGCTTTTTCTATACCGTA +AAGGTTATGCTTTAATTCCCTTATTTTTATTTCCTTATCAGCTTCATTGGTAATTTGTCTCTCTATTTTT +TGTTTAACATATTCAAAAGCCTTAACTAAAAATCCTCCAGTTCCAGCAGCTGGATCTAATATAACTTCAC +CTGGGTTGGGATCGATAATTCTGACCATAAAGGAAACTATATTCCTAGGCGTAAAGAACTGTCCGTAATT +ACCTTGTTGCCCAAGTTTATACATCAAAAATTCGTACCCTCTACCTAAAGCATCAAATTTTCTTCCTTCG +TCTCCAGGTAATTTCAGTAGCCTAAGCCTATCTATAACCTGGATTACCGTATTATCGTTTTGCATTCTCC +TGGTTTTGTTGGAGAATATTTTCTTGATTATACTTCTATCTTCATCTATTTTTGGATCTCCGGTATCTGG +TAAATTAGCCAAATCGAGAAACATTTTATCCAAAAATTCTGTTACTGTTTTGAACCCCTTACTTCTAGCA +TAATTTCTAGGATCACATGCCCAGTTAAAGAATCTGTACTCACTTGGTATAGTGGACTTATAGTCTTCAC +CCAACTCTTTAGCTATGTTTTCCTGGTAAATTTCCTGCTCATCAAACAACCTCAGGAAAAACAGATACGA +GAATTCCTCTAAATATTCCGTTGGTTTTACTATATCGCTTCTAAATATATTAGCAATATTCCATAACTCA +TCTCCAAAGGAGTTCCAATCAACTTCTTTACTCTGTTTCATCGAGTTTTCGTAACACGAATTAGCCAGTT +TCCATCACCGCCTCATCATATAGTTTCCAGAATGAGTTTATATCTTCAAAGCACCCTTTTACCTTAGAAA +ATCCTCCAGCTTGCTTAACCACCTCAGCGTTGAAAAACGCCTTCTTATCTATATTTGGGTTTCTCTTTCT +AAAGTCATAGAGTGCCATGAATAATCTTTCACATTCTTTAGGATATCCTTTCTTGTTATACCATTCCTTG +ATAAGATTCCTTTTCCTTTCCTCTGGAGTCGGGAAAGTTTTCAATCCCAAAGCCACTTCTACGAAGTCTT +TTAGGGTAGCGTCGGGTTCTCCATAAGTATCCTTTAAAACATCCTCTGTTATGCCTTGTTCATTAAGGAA +AGCTTCAAGCTCCTTTAAATAATTCTCGTTTAACGTTTTACCTCCATTTTTCCTATAAAAATAGTCGAAG +GATCTGACTGCGGTTTCAAATTGTGTCTTCTTTATTTGTACTTCTTCTTGTGCTTGTAAATAAGCCTTTA +CTTGTCTTACTACTTGTTCACTTATTCCTTTTAATTCATTCTTAAAATTCTCAGGAGTAATTACTTCAGC +ATAAACTATACTTACTGGAATATCTAAGATTACCATCTCTTCTCTCTTTTGTTCTCTCTTCACTTCCTTC +TTGGCAGTAGTCCTTTGCGGTTCTTCTGTGGAACCCATAAGCTCGCTTATTTCCTTCTCTTCTTCCTCTT +CTTCTTTCACGATGTCCTCATTCGTTATCGGCTTGTCTTCTTCATTTTCTAATCTCCATGTGTCCACAAA +ATCAATAAGATAGAATTTGTCCTTTACTTTATTTCCCTCTTTATATATTCTAGTCCCTCTACCTTTCATT +TGTAAATATAATACTCTGGATTTTGTAGGCCTTGCCATAACTATTACTTCTACGTCAGGGGCATCAACAC +CAGTGGATAGTAAATCTACAGTAAAAGCAACTTTGATCCTAGAGTTAGGACTTTGGAATTCTCTAACTAA +TTCCTCATGATTAGGAATAGCGGAATGAATAGAGCGGAAAATTTCTTCAGCCTCAGCATTATCAGGAGAG +TATCCCATTAATTCATTATATTTCCTAATAAAAGCTAGCCTGAGATTTTCTGCATGCTTAATACTAGCTG +CAAAAACAATAGCTTTCTTCAGCTCTTTAGTTTCTTTAAAGTTTATTGCTTCGAAGTATTTTTCAGCTAT +TAATTCATTCCTCATTGGTATATCTACTTTTTTACCTAAATCGTTAGGATCAAAATCATAACCTAAATCA +TGAATTCCATAAATATCTACATTTGTAAGGAACTTATAGTAAATTGTATCTGCTAAATAGCCGTCTTTTA +CTCCCCTACTATATGTATATCTAAAAATAGGATATCCGAAATACGCAAAATTATCAACATCCTTATCAAT +TTTAGGGGTTGCAGTAAGCCCTAACACTGCTGCTTTATTAAAGTATTGCACAACTTTATGCCAATCTCCA +TAATACGATCTATGTGCCTCATCTAAAACTATCAATTGGAAATGATCTGAATTAAATAGTTTGAATTTCT +CATCTACATACAGCATTTGTACTGTTGAAATGATTATATCTGCAGATAAGTCATTAATATCACCACTTAA +TTTTCTTATATTATACTTGTCTCCTAACCTAGCATTAAATCTCTGATAAGTTTGGGTTGCTAGGGAATCC +CTATCAACTAAATACAAGACATTTTTTACCTTGCCCTCATCAAGGAGTTTCGCTATTGCTGCCATTACAA +CCTCTGTTTTCCCTGTTCCAGTAGCCATTTCTACTAACATTCTCTTTTTACCGCTGAGAAAAGACGTAAT +TATTTGCTGTACTGCAATCTTCTGATAATTTCTTAAATCAAGGGCATTAATCGAACTGGAAACCGGATTT +AATGTTACTGAAACTTCTTCAGGCTTTAGAAACCTCTCTACTTGGGTTTCTACTGTATTTGCATCTAGGT +TTTGCATGTACCATTTTTGACCATCACACGCATAGATATAAGGTACGTTAACTCCATATTTTCTTAGAAT +TTTAGCACTCTCTCTAGCCTCTGCTATTGCAGCTCTTAAATCAACACCCTTTTTCTTCGCCTCAATTAGA +ATTACCTTATCTCCTAAAATTAAAGTATAATCTGGTCTATGTTTTCCTTCATTTTCTGTAAACGATATGT +TTGGGAAGAGATCCTTTAGGGTGTGGTTTTTCTTAAATTTCTCGAGATTCCATCCCAACTTCCTAAGATG +TTCATCGCATAACGTTATCGCATCAGCTTCGGTATTTGGCATGATAATAAATATGCAGAAAAATTTTTTA +ACCTTTCGGGGGTTAAGGGGTGGGAGCCCCTTATACTAATTTTAGAAGAGAACAGCCCCCAGTTTTTTGA +AGTTAGAAAAGCAGTTTAGCAGTATCTGAGACAGGTTAAGCAGTCCTGGAATAAGCAGGGTTTTAGGCCC +TAAATTAGCAGCTAAGGCTATAGGACCTTGTAAAGCAGTTTTTCTAAAAACATAGTTAGTAGAAAACTCC +GGAGCTAGTAGGGATTAGCAGTTTTAGGTTTTGGGTTATAGGGCGTTAGCCCTTATACTGTGATAAATTC +TATTTGAAGAGAAGGGAATTAAGGTTTAGAGAATAGGAAAGAATAAGGATTAGCGCAGTTGTATTTAGAA +AAGAATAGTTTAGAATTATTTATATAGAGAATTGCAAGGTAAGGGATTATAATAATAGATGAAAGCCGTT +ATGAATAAGATAATGGGCTAAAACGAAAAGACCTGGAGTAGTTAGTGTTGGGAAAATGGTTATTGAGCTT +AGGATCCTGGAAGGGTATTAAGTAAAATAGTTAGTTAGAATGGGATATAGCAAAGAAGGAATGAGACCCT +AAGATGTTAAATTAGAGGGTATTAGGTTATAGGGTTATTTAAGGCTAAGTTATAAGAGTAAGTAGGTTTG +TGTTAGTAAGCAGCTTAGAAGAATAGTATAAGCAGAAAGAGAGTAGAGGTGCTAAGCAGAGAATAGTTAG +TAAAGATAGTAAAGTTTAGAGGCAGAGGAGTAAGCAAAAAGTAGAGAAGAGAGGTTGTTGTTTGTTAGAG +TAAGAAAAGCTGCTAAAGAGTAAGCAGTTTAGAAGCAAGGAAGATAGTAAGTAAAGTTTAGCAAATAGAT +CAGATTTGAGTTAGACAGAAGTAAAAAGAGAAGAAGCAAAAGTAGAAAAGAAGAGACAGTAAAACAAAGC +TAGAGTTAGAAAGAGTAAGAATAGAGTTTGATAGTTAAAAGCAAAAGAGTAAGAAAGTTTGAGAATTAAA +GGAAGCGGGCGCAAAGCCCGAAAATTGGGTATAGAATTTTGTTTAGATTATAAGTAAAAATTAGAGAATG +GGGGTATAGAGATGAAATGCGGTGCACGAAGTTGCATAGCCGAAGCACAAAGTAAAATATCCACAGCATA +AAGTCATATAATAACTGCATTAATTCTAATGTTGAATAATTCTTTCTACTGAGGTATAAAATTTGCATAG +TTAGGATATGAGGGGTTTTTAAATATTTACTATTATTAGGATGAGGAAAGATGGGAGAAGAAGTAAATAA +TCAGTCAATTCAAAACCAACCTCAGTTAAATCAAAATAATTTAAACAAGGGAGATAATATCTCTTCTAAT +GAAGAGAATGTAAATGAAAAGAAGAAAGAAGAAAAGAAAAGTAAGAAGCAGAAAGTAGAGAAGAAGAAAA +GTGATGATTACTTATTATTAGTATATCCAGAAAAAGCAAAGTCTTTCAGAGCCAAAGTACAAAATTGTAT +TATCGAAATATTAAAGAAAAACGAGTTAATGAACGAGAAAGACTTAGTTTTGCAGTTGATTTTTGAATGC +GAAGCTGCTAAAGAGTACTATAAAGTAACTCACGAGACTCAGTACCTGAGGAGAATTATATGGAAGATGG +CGAAGGATAAGACGATTTTGAGGGCGAAAATAGTTGGAGATGAGAGGTATACATGGTATTTATTACCAGA +GAACTTAGAAAAAGTAAAGGATAAGTTATTACGTAGGGCCTAAAAGGATAGTTTTCTTAGTTCCAGCTGC +TTGGATTAAGATCTTATTTTCTTTTAGTTTTACGTCTTCCAGTAGCTCCGGATCCTTTGCTGCTGCTTTA +AGCAGTTCTAAGTCTGTCTTAAGTACCCTGTACTGCTTATCTCCTATCTTTATTATTGCATAATCGGTAT +CCTCTTTGAGGACCTCTATCGTTACTTCTTTCAGCGTTAAACTCCCCAGTTTACTGTTAGCATTATTGGC +AGCAGCTCCCTGGGCTGCTTGTTGAGCTATACTTTCAGCCTTCTCTTCTCTTTTGCCGTTAAACTCCCCA +GTTAACTGTTCTTGTTTCTGTTCTTCTTTACTTTGTTGTTCTATCTCTTTCTTTAACTTTATTGAGAATA +TCTTAACTTTGTTTTTCTCTACATCAGAAAGTTGATTATATAGCTGCTGCAGCTTATCAAAACATTCTTC +GTATGCCCATGAATGTACTTCTGCAAAGTCCTTAGTGCTTTCCTTTCTGAAATTATGCATTACTTGCTCC +GGATGTACACTAAGCTCATTGCAGCTTTCTATTTCAATTGCAATAGATCTATCATAAATGGGCCTCAATG +TTGATTTGTCGATAGGTATAGCTACTATATCAGGTCTAGACGTCAAGCTCTGGTCTTGTTTGGCTGGAGT +TACGTAATAACCTTGCTTCATGTACCTGAGCATTACCTTCATGGCCAGTTTTCTACCTTCAACAGAAGGA +GCTACTGCTTTAACATTTCCAAACAGTCCCTTACCGTAGTAGAGAACCTTTTTGTTTCCTTCCTTTTCAA +CGTCTATATAACCTAGTTTCTCCAATCTGTTTACCACATCATTCACCTTATCCCTGTCCAATCCTAGCTC +CTTTAATAGATCAACTAAATACATCTTCTTCCCATTTTTGAACACGTGATATAGAACCAGTTGTTCTAAT +ACGTTAGGTTTCTCTATATATTTCATAATTGGGTTAACTATACTCTCTATGTCTTCGCTCTTAGGTATCT +CTCCGGTTATATATATCTGCATTCTGTCTATGACTTTCTTCAGCTTCTCTGGGTTCTTTTTCACAGGGAC +GTAGTTTACTTTAACCCTCACTGGGACAACCTTATCTCCCTCTTTTCTCGGTGTGATTATGGCTACAGTT +TCGCCTACTCCTAGGCTGGGTAGGATTTTTTGTAGCTCTGAGCCGAACTCTGGAAATATTTCCGCAAACG +CTTTAGCGTCATCTCCTTGTTCCTTCATCAACAGCTTCACCCCAGTATTGCTCATTATTGATTTAATGAG +GGGTTTGTCTAACTGTCCAGTGTGTTGATGAGCCATGATAATATGCATACCGTACTTCCTGGCTTCGCTT +AGAATATCATCTATAACGCTCAATGATGCAATATTCTGGAACTCGTCCATAAATGCAATAATAGGAATCC +TTTCCATGCCTAATGCAGCCCTCGCTAATGCATAGTACCATGTCTTGAAGATCCAACCAGCTAAAATCAG +GAATGCCGCATCATTTCCTACTGCAGCTTTTGATGCGTTTATTACTATTATGTTCCCGGGCTTGAATAGT +TCCTTATCATCTATCTTACTCCTACTGAATATCTTTAGGAGAAGAGGGTTTGTCCCTAACATCTCAAGCC +TCGACACAGCTGAGAGGAAGCTCTGTTCCTGCATGTTTTGGAACATCCCTAATTTATTTTCCCAAGTAGG +ATCATCAACTGGGAGATCTATCTCACCTGTCCTCAGTTTGTAAATAATTCTGTATAGATCTCTAAATGTA +GGTTCTGGAGTTTTAGAATAAAGTAGCTGCATTGATACTTGAATGATATATTTTACGTAAACTGCGGTAT +CCTTAAGTCCAAATAGTTTCTCGAATATTTCCATAACATTGCTGAACCCTAGTAGCAAGGCTTGTTCTTT +ATTTGGGATGTTTGGCAGTGCTAATGGGTTGATTGAAATCCCTGATTCTACAGGGTGGAAGTAGATTAGT +TTTTCGTCATCTGCAAAATATGAAGCAACCTCTTCAGCCATGTCTCCGTGCGGGTCAAAAATCATGATTA +TCGTGTTATTGTAAGCTTTCTTTATAGCAGTTATCAAGGAAATAATTGTTGTAGTCTTCCCAGCACCAGT +GCCACCTATGACATATCCGTGTCGATAAAGATCTTCTAACTCTAACATGTAAGATTTACCAGATTGGATA +GTTTTGCCTATTTCGAAACCATTCCTGTTAGGAGGAAGTTCCGGAAGTATCCCCCCGGTTACGAAGTTCA +CTGGGATTATTGATGGATTGGGAATTACAGCTACTTTATTTATTTTCTCTTCATCAACCCAGAGCCATCT +CTTAATTTTTAATGAATGAAATCTAGGCACCCTGGGGATATTATCTTCCCATCCCTTAGTTTTCCTAATT +TCTAGTCTTAATTTTCTAGACCTAGTTAAAATAAATTGCTGAAGCTCCTTAGTCAATTCTTTTATTCTTT +TTTTATCATCTGAAAGAATGTATGGTTGTAAATAGTATATGTTATCTTTCGCAAATTGCTCTAATCTCGA +AGCTAGGACTTCCCTCTGTCTTTTGCCTATTATAGATTGGTTCCTTTTCAATTTATCAGAATATTTGAGA +AATATCTCGTTGAGCCGTGGCTCAAGGACTATCCAGAGCCTTAGTTGTTCCCTTGGCCGCAATTTAGTAA +GAAAACTGTTGAAATCGTTGAACTCGGCACCCCAGTAGAAATCTTTCTCGTTTTTGAACAAAATACGACC +TACGAATTTAGGGACTGGAATGTTAACATTTTCGTTAACACCGAAGTCCTTCCTTAAAACTTCTAGTTGT +GTATTTGTGTAAGCATAGAGGTGCATTAAATCTTTGTCTTTAAAATATATGATCTCGAAGACATGTCCTA +GAGAATTTAGGATGTTGAATGTCTTATCGTACTCGACTTTTGGGAATAATTCGTAGTATTTGATTACTTC +TTTTTTGCCCCACATCAGAAGAATATTATTTAAAAAGGGCTCAGTGTGGCAGTCTTTCCTCATACTCTCA +GCATGTCATCTCTTCATCATTGCCCTAAATTTCTATATGTAGAGAAAGTTTTATAAACTTTGAATAAACT +CCCCAGTTTAATGAGAAAAAATGAAATAACTTTAGTGAGCTAGGAAGAGTACTACTATTAAAAATAGCCA +ACCAGCTACTAATATGTAGCCTAATATTTTCTTAGCAACCTCAGCAAAAACTAATAAAATGTAAATAGCA +GTTAGCGGGATTAACCATGCTATAATATTAGCATATGTTGAAGCTAAGCCTGGGTCTTGCTTTAACAATG +TGTTCTGCAATATACCCTGAATAATCCCCACTAACCAATTATATCCCTGAGCTACAAGATTAAGAATTCC +CTGGAAGAAATTTGAAGGAGGAGCTGGGATTTTCTGAGCATAGCTCTGAATCTGTGTCGAATTGATAATA +CTGTTGTTTGTAGTTGTTGCAGTCACAGTTACTCCTAATACTATTATAACGAATAGAGCTAATAGAGTCC +TCATTTTTGCCCAGAATAAAGTATTTTAAAAAGCTATTAGGTGATGGACTGGTTTCTGTCATTATTTAAC +ATTATATTAGTTTTAGTATTCTATGAGGTGTTTCATGGGATACTTTACTACAAAAGTAGGGAAGTGAAAA +GGGAAGGAAGGATAAGCGTGAGAGTTTTAAATATTAACGAAGAAAACGCGGTAACACTTAACAGTATATT +CTTTAGAAACACTATAGTTTTTCTCTCTAACAAGATAGATGAGAAAATCTTAACACATGAAGAAGGACAT +ACTAAACAATTCAATTACATTTATGCTTTTCTGATAGCAGTAGCTGCTTTGTTATCAATTAGTACTTTGT +TAGCAATCCCAGCTATTCTGGTAGGGAAATTCTTATTATGGAAAATGGAAAGGGATGCGGATCTTTACGC +ATATACTAAATATAATATAAAATACGAAAGCGTTGCTGAGAGGCCTAAATCTAAAATTGATAGAATAAAA +GCTTGGGTCTTTGATACTCATCCACCTGACTGGGTAAGAGAAAAAGAAGAATATTATGAAAAAAAGATTA +GTTTGATCAAATTATTTATTCAAGATCTGACTTCTTAATCTCCTATACTCAACTATGCCTCCGATCAGAC +TTACGAACCCAATTAACGCCAGAAAGTCCGTTATGTAGCTAGCATCGCTCCCCAGTAAGCTGCTAAAGCT +GCTGTCGAAAGTACTAGCTATAGCTCCTCCTAACAGCGCTAACCCGGCTATGAAACCTCCCACTGCAGCC +TCATGGTTGCCCTTCCTATACTTCGTTACTGGCATCTTCACTACTGCTTTTGCCTTACATTTTATCACTT +GTAGCCTTTTCATTGCGCCTCATCTTATCTCTTTTTAAAAACCCCCTATCTTAGAATGAAGCTAAGAGAA +TTAACAGTAGGTTGGCTATACACGACAAGTGGAATAGATGAGAAAAGTTTCCCTATCGGAATAAAGAACG +TGAATATGAAAGAATTACTAGTAATATTTCCACTGCTAATACTGACTATCAGTTTTGCTTTTAAGAATAT +AATGATAGCAATGGCATTTATAGCACCAGTGTTCTTCTTCGTATTTTATGAAGAGAAGTCCATGGATGAA +TTTCAGTACATATATCATTTCCTCAGGTTCTATCTCAACGACTTCCTGGCGCCTAAAGAAGAGAAAAATA +AGAAAGAGAGTAAGAAGAAAGTAAAAACTTTTGACATAAAGAAGTTTAAAGATGAAATAATAATTACTGC +ATCGGCGTTATTAGCATTAACAAACGTAAATGCGTTCATAAATACGTTTCAGTTGAAGTTTTACTACCCA +ACCTCATTGAGTCAAGATCTACTCTTCGCCGTTGGAACTGGTGTAGCAATAGGATTTATTATATCGAAAA +TTAGAAAGTAAAAAATAAGTTAATCTATTTTTATCACATCAACTTTTCTTTTGCTTTTTAGTCCTGCAAC +TATTTTAGGGTCATTGATATACAGCGTAAGTTCCATAGGAAATGCCCTATACTTTTTTGCTAGTTCTATT +ATCTCTTCTGGATCCTTACTTCTTATTGCCAGCATCAAATATAATTATATCTACAGGCTAATAAATTAAA +CAAAACGATTGCTTTCCCTAAAATTACGTTAAGCCGAAGATCAGTTTAAACTAGTTGCTTAAGAGAAAAT +AAGGAAAAACGGAACTGCTGTTAAAGTTTTCAACTCAACTTGTTTATTTCTTCATTTATCTTCTTCTGCA +CTTCACCTATCAAGTCGTTCAAACTGACTACCTCATACCTTACTTTTCCGTTCCTTATTGCATCCCTAAC +TTTTCTTTCTCTCTCAGTTAGAGAACTAGATTTCCCGCTCTTAACTTCAATGAAGATTACCTCTGGGTGT +ACATTATCGTCAGAAAGTCCTTTGAAAGCAATGTAATCCACTGGACTACCTAAATGCCTGAAGTCCTTAG +GATTAACTTGATATTTGTCTGCCAGAAGTAGAGGAGCAAATTCTTCCCCTATTCTTCCTAAAAGAGTATT +AACTGATCTAGCTATAGCGTCCTTTCTTATCATTTGTTCATTCTGTTGTTTCCACATTTCCAACTGCGCT +TCATATTGCTGTTTTATTGATTGTTCTAATTGCTTCTGTAATTGTTGTGAGTGTTGATTAACCCAGTTAT +TGAACATCTGTTGAGCTATTTGTTGCGAATTAAGCTGAACTTCTGTTATCTTCTTATTTAGTTGCGAAAC +CTTCCTTGAATAATATGCGATAACTATTATTAGGACTATTAGAAGTAGAGCTGATACCCCACCTAAAATT +TCCACTAACATATTTTCTAAATCGAAAGAGAGAATTATAACTTTTAGCACTTGTAAAGTTTGCCCTTATT +TTACCTTAAGCACCTAGTATAAACATCCCTTTTGCTTAAGGTGGTTTTAGGACTAACTCCCGTAGAGTTT +AAAGTTAAAACAGAAAAGTATTTAGCTATAGAAGGAGAATAAAAAAGTGAATGACGATGAGGAAGTTTAA +CTATAACGAAATAGTAATCCTCAACCCATTGCAGACTAGGTACCAAATGATGTCTTCTAGGGTATTCATC +TCTCTCCATGCTGCAGCAAACGACGGAATTTACAGAATGAATAGAAGAAAGTTTGTGACAAAGTACGGTC +CAAAGACTATAGGAATATATATGCTAGGAGCTTTCGGCGCTCTCATTTTACTTATAGGTATAGGTATGGC +AGCTTATCCGTTCACTCAGACTACTGGGATGACTAGTGCTGATGGTCTAATTGCTATAGTCATAGGAGGG +CTTATGTTATATTTTGCTATAAAGAATGCAAAGAAAACGGTTCAGAAAATAAATGAAGAGAAAGGGATTG +AAGGGGAACTTGTAGTCCCATGGAATCAAGTTAAGACTATAACTGTCATGAATGTGAGGCAAGAAAACGT +AGCTAATAGGCCTAGCTTAGTTCTCAATACTATAGCTCCTACTTACAAGGAAATAGGTGACTGGCATGTA +CTTACCATAGACGGGAGGGACATAACAATACCTAACGTAGATGATCCTTATAATAAGCTAAATTACGTAA +AAAATAGATTTAATTTAAATTTTAGTTGATTTTTTACATATATCTTCCAGGTGGTGGTTCTGAGGACGTA +GATCCGCCACTATTATTTTCTACTACTACGGTATTTCCGGATCCTCCTCCGTTTTTCTTTCTGAATGCTC +CCATCATATGTTCTCCTGGTCTTAGTCCGAAGACAAAGAAAGCTAGAGTGAACAAAAATTCCCCATCCAT +AGCTATAGGGTCGATAGCAAACATTAACGCTCCCAATGGCAGTGTTGCCAATATAGCGAATGTTACTGCA +GCTATCAGCCCAGCAACCATAAGTCCTATCAATAAGTCTATGACCACCATAGCAATTTTTCTTGTCCATT +CGAATATCCATAGAGTAGCCCATAAGGGAATTGTGTCTACTATCGCTAGCATTACAGCGTACTTAATCGT +TGCTATTGCTAAAGTAATAGCTAATAAGAACATAACGAGGGACAAGAACATCGACAACGCATCACCAAAC +CCAAACGGGATGCCATTCATTAAGGCAAATAATGCAGTAAACAATGTAGCTCCCCCTGTATATTCAACTG +TTGCGATCCCTAAGTAAGGTCCTGCAACAGAATATATTATAGAATTAATGAAATTCGCAGCGTAAGTATA +AATTGTTAGGCCACCCGCGAAGAACAGTCCCCAAACAGATAATTTGTACATTACGTCTCCAGCAAGATCC +ACGAGATCGGCATACTCTCCCCTTATAGCGTTATAGGCGATTGAGAAAGCTATGAAAAGCATTGCGAGCC +CAACGCTAAAGTCTTTCATTTGGTTGTAAATTGATTGTGACGCTGGTGACATGGTAGGAGTAGGAGAATA +TGTCATCCATTCCAGAGGTGCTCCAAAAATCTGTAGTAATGTTGTTAGGAATCCTGTAAACGCATTAGCG +ACAGAGTTAATTAATCCAGAAATTGCGCCTGTGATTGCTCCTTCTATCCACCCAAGAGGTGAAGGGGGGT +TTGTAACTGTAACCAGAACTGCCCCAGAACCTCCAGCAAAATTCTGTTGATTAATTACACTTGCTGCAAC +TATGTATTTACCTGGATCATTAAAAGTATAGGTAAAAGAAGTACCTCCAGTAGCGTTGTACACTATACTT +CCATTATATAGAACAGTCCATATTACAGTTCCAGACATGGAAGGACTCCATGAGACTGTATAAGTTTCAG +TATTGCCTGTGTACGCTGAAGTAGGACCAGAAACTTTTACCTGTAGTTGCACTAGCGTAATTTGTACATT +TCCTCCTATCTTACCTCCTGTAGCAGCTGCAAGAAATATCGCTGATGCCATAGCAGCAGCAAACAACACT +AACGCATAACGCTGGTCGTATCTGTTAGCTAATATTGCTAAGAGTATGAGAGCTGCTGGTATCAGTGTCT +GCAGTGTAGCTATAAACTGGCCTAAGCCACCTGGACTTCCTCCTCCACCTCCTTGTGCCGTTGCTATAAT +ATTTCCTGCTCCTGAAAGCAGTGATGGAAGTACTAATATTATTAATAGGATAGTTAATGCTTTCCTCATT +TTCCACTCCTAATCAAGCTCTTTTTAAAAAGCTCAGTTGAATAAACTCCCCAGTTTACTGAAGAAAAATT +CAAGCCTAATCTCTTTTTTCAAACTCCTTAACAAACCTACTAACTAGTCCTAACACTTCCTTAATCTTAG +GTAAAAAAGCGGATAAGGGAATATAGTAAGCATTCTCCAAGCTTATGTCTGGTTCCCTTGAGGCGATAAC +TATTAAATAACTTTTATCACACGACCTGCTTTGTGGGTTACTTCAGAATTATACAAAAATTTATAAATAA +TTATACCGAGTATTACTCATGGGAAAGAGTAAGTACAAGAGGGATTGGAGCAAGTACGACGAGAACGTTA +TAACTAGATACGAGCTAATGTTCCCCTTCTACGTCTTCCAACACTGGTGGGAATTACTAGCAGAAGAGAA +TAGGAATGCCAAGAAAACCTACAAGGCGCCAAAGGAGTTCAACGACTTCCTAGCGTTCCTGCACTTGTTC +CTACCTTATAGGGCCATAGAAGGAGTATTGAGAGCATTAGAAAGACTGAAAATCATCCCAACAAGCCTAG +ACTACTCAACAATATGGGAAAGAGTAAGAAACATGAACATAAAATTCCCAGAGGCAAATGACCAACTTGA +AGTAATAGCAGACGCAACGGGAATAAGCACAAACAAGGGAGGACAATACATTATAGCAAAATGGGGAAAA +ACCAAGGACTCAAAATTCCTCAAGATCGAAATAGTAATGGATAAGGACCAATTCAACGTAATAAACGCTG +AAGTAACCAGCAACGAGGTTCAGACTGCAGTTAAGACGGTTAAGGATTTACAAGATAAGGGAAAGAAGGT +CAAGAAGTTTTATGGAGATAAAGCTTATGATGCTAATGAGGTTTACAAGACTGGGGTTGAGGTTGTTGTT +CCACCTAGGGAGAACGCCTCCACTAGACGCGGTCATCCTGCTAGGAGAAAGGCTGTAAGGGAGTTCAAGA +GGTTGGGTTATAATCGTTGGAGGGAGGAGAGGGGTTACGGTGTTAGGTGGAGGATTGAGTCCTTATTCTC +TGCTGTGAAGCGTACTTTTGGGGAATCTGTTAGGGCTACAAGTTTTTTAGGACAAGTGGTTGAGGCTAAG +CTCAAGTTCTGGGCTTATGCATGGATGGTCCACTTGGCTAATTCTTTAGTTGGTAGAGCTCCGGGTATTA +GGGTGTGAGCTTGCGAATAACGTTGAAATAAATATTAATTACTGAAAAATTCTCAGTGCATCATATCATG +CTTATGAAATAAATTGAAGAGATCAACAAAGCACACACGACCTTAATTCCCTCAAACCTTCCAGTTCTTC +CGTAAGTTGGTCTTTGTCTATACCGTTACCGCTCTTGACCTCAAAGCCTATGCATAAGCTCTTCAATTCG +GCATCCGTAGCTATATATAACGCATCTATAGCCCTATCGTTGGGCAGTTTAACCTCCTTAGAGGAGTACT +TTATGCCGATAATTTTCCTAGCCCAATCGTCGGCATTAGCTTGTAAAAGCGTCATTACGAAGTTAGGGTT +GTAAACTATTATCGTCTGTATTATGTCGTGTACATATACAAGGTTAGAATAGTTGGCTACCATTCCCTAA +CCCTCCTTACTACCTCTGAAGGCAATCTGTAGAATACTTTATAGAAGTAGGAGTAGAGGTCTGGTTGGAG +TTTCTCGCTAACTAAGAAGAGCTTGTCAAATACTTCACCTATGGGCGGTATACTTTCGTTCCTCCATATT +AGGTCACTCAAATACTCCTTATTTGATGAAAGTATGAAGTCCTCTGGGTGGTCGTCGTTAGCTCCGAAGT +AAGGCGGGTCGTAGATATGGCTCATCACTTCCGTGTTCTCTGAGATTTCGTTAAGCAATAACTTGTTATG +TTCTAACAATAGTTTAGTTGAATTCCTCCTAACCTTAGTGAGGACAGATCCCAATACTCTAGGATTATCG +AAACTGCTCCATATGTATTTAGGCAAAGCCTCCTTAAGGAATATGAGCATTGCGTTAAAGGCCTCAATGG +TACCATCTTCTGGGATTATTAAATAGTCCGAAGCCCTCAGAACAGGCTTTATTGTGACTACGTCAGAAGG +TGAGGTATCTATCAGTATGAAGTCATATTTTTCTCTGAAGTTCTCTAACTCTTTCTTAACTGCAAACTCA +TCGAACATTGGGAAGTAGCCTTTGAACATTGCGTGGAAAGTAGATACGTAGGATCCCGGGATTATGTCTA +ATGAAACTTTTACTTCTCCCTTAGAAGTCTTGGAGACGTGGAGAAAGTTCTCTACAATTACGTCCGATAT +CTCCCTTATTCGGTAGACCCAAAATCACCTCCTTGAAAATAAATCTATATTATTAATAAGCGGTTCTATT +GATTTAAATAGAAAATCTTTTAGATAGAATAAATCATCAGAAAACAAGAGTATTAGGAGTATCCTGAACT +GCTCCCTCCTCACCTCCCCCTTGAACACGGTGTACAGGGAGTAGAAGGCCACGGCCAGCACGAAGATCAA +CGTGCGGAAAACAAACTTAGTAGAACTAGTAAATGGAAGAAAAGCCTTAATGTTCCTATAAGAGGTCTCT +ATGGGACCCCTTACCTTATTGTACAAATCCAACACCTCCCCCTTCGGTAGGTCTAGATTAGTAGCCCTAG +CAAAATAAACAACACTCTTCTTCTTTCTCCTCACTTTTTCCTTGCTGTACACGAGAAGCCTGAACTTGAC +CTGCTCATCCCTCCTATGCCTCTTACTATTAGTTGCGTAATCCCCGTCAAACTCCTCATAAACCTTAACA +TCCCCAACAGGCACAGCAACTATATACTTAAACTGTGAAATGAAGTTGAGCACATCAACAGTATAGAAAC +CTGCGTCAAGAGTTATCAACCTTATCTTGAACCCCATCGCGACGACTTGCTCCACGAGGGCCTTCACGAT +CTCTTCCTTAGTCATCCCCTTGACTTGAGTGACGAAGGCCAGTAGGAGCACTTTCCCATTAAACTTTGTC +GTCGCAGTTGCGTAGTTCCAAGAGTTTCCCTCCTCCGAACTCCCGAGCCCTCCCACCGGTCTCCCGTACC +AGGTCTTGGTTGTCCAGTCTATTGAGACGTCTATCTCCTTGACTCCCTTCAGTACCTTCAAGGATATCTT +CCTGGCGCTTTCCAAGAGTTTCTCAATAACTTCCATCCCTTGCTCCTCCACGTAATTCCTCACGGTCTGT +GGGGACACGCCATACGCCCTCGACTTGCTTTCCACCGAATCGTTCCATAAACACGCTGAGATGAGGGTTC +TCGCCACCTCTTCCCCTTTCTTTCCCTTGAAGTTCAGCATGGAAAGTAATTTATATCCTATTTGTTGAAT +GTTATTTTGGTGAGGGAGTACCGGTGTTACCATCTCACTTACTCACGTGGTAATACCACATCTCCCTCAG +CTTAAACCTTTCTTCAACTGAATTCTTAATACTCATATAAATCCTGTTATCTATCATGAATCGATATTAT +TCTGTCAGAATTATTTTTCATAATACGATTTTGGGTCTACCGTATTAGGGCGTAAGCACTCCTATCCGAT +TCCGGTCTTATAGACTGTTGTAGGATTTCCTTCCTTCTCTCCTCCTTAACGAATATCTGTGTTAAGGACA +TTTGTGGGTCGAAGTCTATCAGCAATACTCTGTGGTTTACTGCTAAGCCCATTCCAAGAACTGCCGTTAG +CGTAGTCTTACCTACACCGCCCTTGAAGTTATGTATAGCTATAACTTTACCGTTCATTTCACCACCCCGA +ATTCCTCCTTTGGGTAAAGCCTCATGTTTCCTTTAACGAACTTGTAGAAGAGTTCCTCCAGCTGTTGTCT +GTTTAAATGAGAAGATAGTAGGGGTTCTGCTACATTATGCCAGTTTATTGATAGGTTTTTGAAGGCTATC +TGGAAGTTCCTCCAAACTTCTACCATGGTAAGAATGGCCTCTTCATCCAGTTTCTTCTCTTCATAGAGTT +GTTTAATTTCTGGGCAATTGGATAACATCTCCTCCTTTAGTTTGGCTACAGTCTGTAACCATTTTTCATG +GTTTATTCTGGTTATCTCTTCTGCAGGCGAGTGAACTTCAGTATTAAACTGGGGAGTTAACTGTTGTTTA +GCCTCTTCCTCCTTCTGAGCCCATTCCTCTACGAAAGAATACTCATCACTTTCAGCCTCCTCTCCCTCAT +CAGTTTCGACTTCCTCTCCTTCGTCTTCTTTCTCTTCTTTTACCTTGGATTTCTTCTTAGACCTTTGCAG +TTTCTCTTCGGTCTTCAGCTTATTAATTGCTTGAGAAACTGCCATCCTATGGTTTACTATCTCCTCAAGT +AGATCCTTCCTCTCATCCAAAATTATCTTTCTTCCATCGGTAAGTAATGTATTTCTTTCGTAAGGAGGTA +ACTTAGCTACAGCTTCTAGTAAGCCCATTTCTTGTAGTTTAGTATAGATACTGTAGGCAGGATAGATTCC +CAGTTTTCCTTTTAGTATATAATCGGTTAGCCATGGTGCATTTTCCTTAATCCTAATATAGTAGTCTAGT +GCTCTATCATCAACCTTTACATTATACTTCTTTAGCTCTTCTTTTACTGCATTCCTTAAATCAGTGAGGC +TTTGAATTTTTTTATTTTGACTTTCACTAAGTTGAACGGGTACCCGTTCAACTTTCGTCTCTTTAGGATT +ATTTTCACTATTTTGGTTCTTTTTTAATATCTTAGTCTTCTCTTCTACTGCTTTCTCTATTAACGCTAGG +GCTTGAGCTTTACTCAGTTGCCTCTGTGTTAAATTTGTAGATACTAATAGATCGTATTCATCAGCTCTGT +CAGTCGTTTCATATACCGCAACTGGAACCTTTTTTATTCCTAATTCCTTAGCTATCTTCAGCCTAGTGTA +TCCGTTAATTAACTCGTAGTTTTGATTAACGATAAGCGGTACCTTTATTCCATTTTTAGCTATATCTTCT +TTGATTTTATCATACATGTTATTTTCAGGGATGAAGGTTCTGAATTCATCAACTTCCTTAATTTCTTCGA +TAGAAATTTCTTTGTACTCTTTCAGCTTACTCATTGAACCACCTCAATCAATTTTCTAATTTTTTCAAGT +TCTGTCGTTGCTAAATGTCTCCCTTTATCCGTTAAGACGTAATAGATTTCTTCACCTTCTTGTTCCTTTA +TTACATATCCCTCTGCTAATAACCACCTAATATTCTGTATTACGGTCTGGTATGGGATTTGTGTACTTTC +GGCTATTTCACTTGCTTTTGCCTTACCTACCTTTAGGAGGTAAATAACGATATATGCCCTGGGAGTTAGG +AAGATGTATTTATCTGTGGATATTTTTCCCATGTTTGCTCTATGTTAATCATAGAGCATAATAATATTTA +AATCTTCTCTTTACATATCGCATAAACCATAGATTACTCTTTTCATTGTATGTATAACATCAACCATATG +AAAGAAAATTATCGCGTTCTCAGTGAGACCGAGCAGTATATCCTATTATATTTAATTAGTATAAAGGAAG +GGGTGGCGGTAAAGGAAATTTATGAGGAAATGAAACTAAGTCCTAACGCTGTTACCCAAGCTGTTAATAA +ACTATTAAATGAGGGACTTTTAACAGAGAAAAGGGAGGAAGTATTCCCTAGAAGAAGATTAATATATTTA +AGTGAGAAAGGGAGGAAAATAGCTCAATTACTTCTTCAGATGCAGGAAATTATAAAGGTAAATCAATAGC +GTGTTAAGTGGAAAGTATTAAAGTGAGAGTTGAAGAATATTAGATTAGTGAAAAGAGATGGCTAAAGTTG +AGGAAGGAGAAATAATTCTAGATACTGAGGAGGAAGTTAACAACTTAATTGAGGCTATAAGGAAAGAGAA +GGTTGATGAAGAATTAATTAAAAAAGCGTTATTGTTAAGCAAGAAAAGCCTTGTATCTAACCTCTAACAC +GTTTTTATATAATGAGTAAAAGTAATTCGCACCTCCGCTCTTATCTTCATAAATTAGCTGGAAACCGAGT +TTTTCATAAAATTCCTTAGCTGTCTTTGTATAAACTAAAATTCCTATACAACTATTATTAATACAATAGC +CTAACGAATAGGGAATTATGAAATTCTTAACAAAAACACTCCCTACCCCTTTGCCTTGATATCTTTTATC +TATACCTAGCTGTCCTAAAAGGATTACGGGTAGTTTCTTGAAACTTATATTGAACTCATGAGGTAAACCT +CTTCTGTTAAACTCCTCCTTCATTACCTCCCTAATCTTACCTATAAAACCTTCAGCGAACGCATAAGAAT +AACTGGAAAATGAAACAAAGCCCGCCAAATCATTATCACAAATTAGTAGAAAAGTATGGTTTATTCCAGC +TAGATAATGCCCTACAGCAAGCCTTCTTATAAACTCGTTTTGTTCCTTCTCTCCACAATCAAAACTACCT +AACCTATTTATGAAAGATGAGTGAATAGTATAAACATAACAATTGCCTAAAGGAGTAGAAATAGTATCGA +AAGGTTGAATATTAGTACTCAACTCCTTATCGATATAAGATAGTCAATTCGACAGATAAAAATTACTTCC +AATGCTATAACTTTGCCCTTATATTATGCTCTATTGTTTATGTAAAGCATAAAGTTTATATACTATCTAT +GCTTTATGATTAACATAGAGCAAACATGATTTCCACACAAACCCCCAAAAATCCGATTAAAAGGTTAGAT +GTTTTTTACGTATTATCTGAAGGTGTAGTAGTAGCTGGAGACGTAGAGAGTAAGAGTAGGAAGGGATTAT +TGCATTATACTAGGATTGTTCTGGATCCTCTAACAATGAAGATTACTAAGGCTTCCTGCGACTGCGAGGG +TTATACTTTCAGGCACAATTGCTGGCACATCAAGACTTTAGAGCAGATGATTAAGGAGGACAGGGAGTTA +AGGGAAAGGATAGAGAAGGCAAGGCAGGAAATGATGCAAATAGAAGAAGACATAGCAAGCTGGGGATGAG +CTATGAGTGAGGTACTGCAGACTCAGAGAAACTTAGAAGAGTTAGTAAAGCTATTGAGGATATACTTTCA +ACTTGATGAGATTCTCAGTTTCGCAATGGAAGAGTTAGGAGGCGATGAAATAGTAGTTGAAATATCAGCA +GTTAAGGACAGAGTTAGAAAAGTGATTGAGAGAATGATAAGTTAGAATTTTTCTTATTAAACTAGGGAGT +TTATTCTAATTTTTCTAACTATTTGTGCTACATGGGTTTTTAAAACGGCTCTTTTTGAGAGCATGAGTTT +CCTTAACTTATTCAAAAAACCAAGTCAGCAAGCAGTAAAGAAGGATAAAACTAAATACTACAAGCTGGAA +GGGATCCCGTTCTTCCTTCTAGCGCCAGAAGATAGAGATATGAAAATGAAGGAATTAAGTGCTCTTTTAA +GTCAAGCTGAAAAGGGCTATATTTACATCAGTCGTAAGCCAGATACCTACGAGTTTGAGGGGACTAAGTT +CCCTATTATTACGTCTTCTTTCAATTTGATAACAGAGAAAGAACTAGACTTAGAGACAGCCGAACCTCCG +CAGAGGCCTAAGATTGTTAAAGAATATGCAAAATATTTACAAACTACAGAGGGTTACGCTAGAGTTCTGG +TTAGTTATGCATACTCGACTAAAATTTACGAAGGTGCGCTTGGCAGAATAGACTTCAAATCTTTACGCCC +TGAGCTCTTTGAGTTAGTTGTTCAGTTCCAGAAAATTTCACCACTTTCTGTAAGAAATTACCTCAACAGC +CTAGAAGTGAAGAAACAGAAGATGGCCAGGTATGCCTCTTCATCAGTTCAAGTTGAGGAAATGTTGGTAA +GAGGGGCTCAATTGAAGAAAGACCTTGATGAGGAGGCTGCAGATCCCCTCAAGTTCAGATTCGTATTCAT +TATACACAGTAAGACAGTTCAAGAACTTGAATCTTTGACAAGAGAACTCACTCAAACTGCCCAGGAAAAT +GGTATACTATTAGATGTTCCTTGTTGTGCTCAAAAGGAGTTATATAGTTTTGAAGGGAGCGTAGGTTACA +GAATAAGCAGTAACATCAGTCTTAGCAAGTTCTATCCGATCATAGGTTTTAGTCTAATTGAGCCTGGCGG +GATATTTCTAGGTACCGATGACAAAGGTGCTCCAATTGCTATCAATCCCTACTTGTCGGTCAACGGGCGC +CAGAACCCACATTGGGCCATCACTGGTACAACCGGTGCAGGTAAAACAACAACTGGCGCTGTTCTCATTG +ATAGACTGAGAAAAGCTCACGACGATGTTTACGTAATAGTCATAGACCCTATGAGTAACTATAACAGATT +CTTTGAAAATGAAGCAGATCTTAACATCGTTTTCGGAGATAATGATTATTTAGGATTGGATCCTGTTAGT +TTAGCTAACGAAGGAGTAGTAAGCTCTGGTGACATTGCTGATTTCTTAATAGAATCATATGGAATTCCAG +CTGAGCTTCGAGGCATTTTAGTAAGCCAGCTCGAGCAAAATAAATCGTTAAAAGAGCTCATGGACAATTT +AGAAGACTTAGCAAGCAAGAAATTTGCTACTGAATACAGAAAATTAGAGAACTTCCTATTGAATATGACA +ACGGGTTCTGATAAGTATGTCTTTCAAGGATCTCCGCCTAGTCTAAAGAATAAGAAATTCGTCATTTTGG +GATTGAAAACTGAGGACACTAGGAAGAAGCGTTTGGCAGCAACTATGCTAATGCTTTATGCATATTCACT +AATTAATAAACTCCCCAAGGATGTCGAGAAATTAATCCTCATCGACGAAGCCCACTTCCTCTTCGAGTAT +CAGTCAGTAGCTAAGATCATTGCGATCATTTACCGAACAGCCAGGGCTTTACGGACTTCAATGATCACTA +TGACACAACTGATACAACATTATAATATGAACAACTATAGTAGAGAAGCCTGGCAATTGGCTAACAACAA +ACTAATATTAAAACAAGAGAAGGAGGCAAAAGACGACCTAGTTAATTTAGCTCATCTTTCTGAAGAAGAG +ATTGACTATATCCTGAAATCTTCACGTGGAAGGGGAATTCTGAGGACTGGCGCAATTACTACACACATTC +AAATCCAACTCACTGACGAAGAAAAAGAACATTGGAGGACTGAGTGAAATGAGCTTAGTTCAGCTCATTG +AAAAAGCTGCGAAGAAATATAATATCAAAATAAATTCTCTCCCTAATGGTGTGATAATTCTTGTAAAAAA +TGACATAGGCTATGTGCAAATAGCTGCAGTTAGAAATGTTTACTATGTCAGATACTTAACGAAAAATGAA +GCGTATATTATACGTAACTTAAACGAAAAGATCATAGAGCTTATACTGGAAGAAAAGTTAGAAGAAACTG +AAGCTATCAAAATCCCTGATGTTTAATAAAAGTAAAGTTCTTTCAATTTCTTTCATTCTCTCTTCTTCAA +ATAATTTTTCTTTCAATTTCTGGTCAGATAAATACTTTAGTAATATCTTCTTTCTCGTCTCAGCTTTTCC +ATACATAATCCCTTTCTTTTTCAACAACTCATATATTCTCAATGCCTCTTCCTTGTCACCACTATATTCA +TATATATAATGTATAATAGGATCCTCCCTAACCACGTGCCTCAGAAGTTTCTTCTTCTGCCTAATCGCGT +GTCTGCCTAGTCCTTTCATTTTTAAGAATTTGATATAGTCTCTGGTTACCACTTTTCCTTCTCTTTCTAG +AATATATTCGTAAATCGCTAAGTAAAAAGACGCGTCCAATTTTTTCTCATCAATCTTTTGCAAAATTTTA +TAGAACATCTCTTTCTCTTTTTCTGTCATAACGCTCTGAAGATAATTCAGTACTATTTTCTTCATATCTT +TGATTTCTTTCTCAGTTTCTCTCTTTTGAGAACTTGCTCTTTCGTAATACTCTAGATTTGAATAATCTTG +ATATGTATAATTATCAAAGTCTACTACTTCTCCCGTACACGAGTCCACCAGAAACCCTTCGCTGTTCCTT +ACTTTGTAGCACTCTTGCATCAGAAAATAGAAGTATTTTAAAAGCCTGTAAGGATTTTGATGGGGAAATC +AGTATTACCAGTAAACTCCCCAGTTTACTAAGAAAAAAGACTTAACTTACCCAAACTGTCCCGTTCCAGA +TCGCTATTATTTCTGTTTTGACTGCTGCAGTGTATTGAAATGTAGCATAGAATATGTTAGGTATGTAATT +CGCTGACGTGAAGCATAGAGTTTCATGTAAATATGGAATATGTTGTCCAGTAGTATTAAGATAGAAGTAA +GTCGTCTCATTGTTAAGTGGATTAAAATAGTAGTATATGTTGCCAAACGGGACTTTATTGAACCCACTGT +AATATAATGCATTGTAAATATCGACAAGATATATTTCATAATTTCCAGTGATATTCATAAATATTGTATT +ATTGTAAATCTGTGGGATTCTGCTTATGTTAAAGAACATTATCTGATAGTTGAAATATTGCAATTTAGGC +CATGCAGACAAATTTAGGATATTAGCAGTTACTAAGCTCCAGTTCTCGTAGAAAGATTCAAGCTCTAGAA +GATTAGTAAAAACAGAAGATGTAGTATTGAAAGTATACATAACAAATTGTGATGCGAGAACGAAATACTC +AAACTTCCAATATTGAAAGTCTGTTTTATTAATTGTTTTCATGATATAATTATACAATGTGTGTGCTAAC +GTAGCGTTTTGCTCTAAATAGAACCACGAAATCGCTGCAGACTTGCTATAAATCATTTTTTGAGAGATCC +AGTAAGGAGGCTGTACTGTATTATCCTGAACGTTGAAAGTAAGATAGTAGTTTATTGTGTTCCAGTCTTG +TTGTGTGTTTAATAGTGGAATAATTTCTATATTACCAGCGTGCCAAATTCTTTCAATAGTATAATTTGCT +ATCTGTATGTGATCGTAAGTAACTATCGTAGTACTATTCGCAATCGGATCTGAGCTCCACGTAGTATACG +TAAAGTAAGCTGTAATATTTCTAGAATTGTAGATTTTATTATTAATAAGTGTCTGTGGATCTGAACCGTT +GTAGACTATTACCATTATTGGTAATGTCACGTTATACTCATACCAGTTGAAATTATAACTTGTAGTAGAT +AAATAAGGCCCTGTAGGGTAGTATATATAATAAATATATGTTGTATTATTAACAGTACGTTGATAATGTT +TATATCCAGCTCCAGCACTTATACTATAGCTTCCATAAACTTCTTGTGTACTTTCTGGAGGTACTGTAAT +CGTTCCATAGATGTAATTAGGCCCATATTCCCCTCCATACCAATAGAAAGTTGTCGCGAAACTCTGAGAA +TTTATCAGCTGATTATTTGCATACAGATAGGCTGTACCCCAAACTTTCATCGCGTAATACTCATAAACAT +AAGTAACGTTACCTTGATTGTGCGTATATTTATTATATAAATATGTATATTCGTTATATTGAACGTTTAC +GCTAGTTTTTACAGAAGTTTCATTAATTATTTTGTAAACTGGGGGGTTTACTGAAATTAGATCTGACGGA +GGATAGCTCCAGCCAGACTGAAATCCATTAGGCGCCTCGAGTGTTTTCCCATATTTTACTATTATATCCC +ATTTTGAATAGTTTTCTGTATCATTTTCATTTAATGGGAACGGCTGGAGTGAAGTATTCTTATAATTGGT +AATATTGACATAGGCACTGCTAGCTATAGATAATAGAGCACCGTATGGCCCTGGAGCAATTTCACTTGCG +TTTCTAGCCAATGCATCAAATAAGAGATTTAACATATTGTTGTCAGGCTTTGAGAAGTTGAATAAGATAT +ATGCTTCTGGAGAAATATTGTAATAAGGTGCTGGTAGATTACTGTAGCTTCCCCTAACATATTGTAGATC +TTGTAACGAAGGGCTTAATGTTACTGTTTTATTATAAATGTACTTAGGCCCTGGGACGCTGTAAGACCCA +GAACTTCCTCCTCCACTTCCTATTTGTATTGAAGAATTCTGTTGAGGTACTTTTAGATTTGCAAAACTCG +CTATAAATGCCAGAATTATTATTATTGCTATAAATAAAACAGAGAATCTTCTAATATCCATTCCGAATAT +ATTATCTCCCATTTTCACTTCCCTACCTTTAGGGG
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/TEST_1/test_1.log Tue Aug 23 10:01:31 2022 +0000 @@ -0,0 +1,43 @@ +/usr/local/bin/FragGeneScan -s /tmp/tmpjm077o6o/files/6/a/1/dataset_6a1f68ad-940d-4e7c-9736-cf5a2ce9fd9e.dat -o results/proteome/1/dataset_6a1f68ad-940d-4e7c-9736-cf5a2ce9fd9e.dat -w 0 -t illumina_5 -p 1 +Using 1 threads. +no. of seqs: 1 +Clock time used (by 1 threads) = 0.00 mins +prepare gff file.. +Time elapsed: 0 hours 0 minutes and 0 seconds. +ISEScan starts at Tue Aug 23 09:39:42 2022 +predict and translate genes from genome sequence into protein database using FragGeneScan program + +Begin to translate genome into proteome. +Translating genome into proteome for /tmp/tmpjm077o6o/files/6/a/1/dataset_6a1f68ad-940d-4e7c-9736-cf5a2ce9fd9e.dat , return 0 + +Finish translating genome into proteome. Tue Aug 23 09:39:42 2022 + +Begin to phmmer search against proteome database. Tue Aug 23 09:39:42 2022 +Finish phmmer searching /usr/local/bin/pHMMs/clusters.single.faa against results/proteome/1/dataset_6a1f68ad-940d-4e7c-9736-cf5a2ce9fd9e.dat.faa , output results/hmm/1/clusters.single.faa.dataset_6a1f68ad-940d-4e7c-9736-cf5a2ce9fd9e.dat.faa + +Finish phmmer searching against proteome database. Tue Aug 23 09:40:02 2022 + +Begin to profile HMM search against proteome database. Tue Aug 23 09:40:02 2022 +Finish Profile HMM searching /usr/local/bin/pHMMs/clusters.faa.hmm against results/proteome/1/dataset_6a1f68ad-940d-4e7c-9736-cf5a2ce9fd9e.dat.faa , output results/hmm/1/clusters.faa.hmm.dataset_6a1f68ad-940d-4e7c-9736-cf5a2ce9fd9e.dat.faa + +Finish profile HMM searching against proteome database. Tue Aug 23 09:40:14 2022 +pred begins at Tue Aug 23 09:40:14 2022 +Begin addNonORFcopy at Tue Aug 23 09:40:14 2022 +Finish addNonORFcopy at Tue Aug 23 09:40:14 2022 +Begin addNonORFcopy1 at Tue Aug 23 09:40:14 2022 +Finish addNonORFcopy1 at Tue Aug 23 09:40:14 2022 +getFullIS() begins at Tue Aug 23 09:40:14 2022 +Start typing IS elements +The single-copy partial IS element with evalue > 1e-50: isLen=989 IS5 bd=[30355, 31343] orf('gi|228288719|ref|NC_012624.1|', 30399, 31298, '+') evalue=1.7e-37 +Finish typing partial IS elements +Begin removeOverlappedHits at Tue Aug 23 09:40:14 2022 +gi|228288719|ref|NC_012624.1|: no intersected hits found +Finish removeOverlappedHits at Tue Aug 23 09:40:14 2022 +Begin reading protein database at Tue Aug 23 09:40:14 2022 +Finish reading protein database at Tue Aug 23 09:40:14 2022 +Write IS elements from all sequences in 1/dataset_6a1f68ad-940d-4e7c-9736-cf5a2ce9fd9e.dat into one result file under results +Write 2 IS copies to results/1/dataset_6a1f68ad-940d-4e7c-9736-cf5a2ce9fd9e.dat.csv and results/1/dataset_6a1f68ad-940d-4e7c-9736-cf5a2ce9fd9e.dat.tsv and results/1/dataset_6a1f68ad-940d-4e7c-9736-cf5a2ce9fd9e.dat.raw +Write summarized result to results/1/dataset_6a1f68ad-940d-4e7c-9736-cf5a2ce9fd9e.dat.sum +End in pred Tue Aug 23 09:40:14 2022 +Both complete and partial IS elements are reported. +ISEScan ends at Tue Aug 23 09:40:14 2022
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/TEST_2/test_2.log Tue Aug 23 10:01:31 2022 +0000 @@ -0,0 +1,43 @@ +/usr/local/bin/FragGeneScan -s /tmp/tmpjm077o6o/files/8/9/d/dataset_89de31f8-93d7-43e1-a4d5-1b0757afa41d.dat -o results/proteome/d/dataset_89de31f8-93d7-43e1-a4d5-1b0757afa41d.dat -w 0 -t illumina_5 -p 1 +Using 1 threads. +no. of seqs: 1 +Clock time used (by 1 threads) = 0.00 mins +prepare gff file.. +Time elapsed: 0 hours 0 minutes and 0 seconds. +ISEScan starts at Tue Aug 23 09:40:26 2022 +predict and translate genes from genome sequence into protein database using FragGeneScan program + +Begin to translate genome into proteome. +Translating genome into proteome for /tmp/tmpjm077o6o/files/8/9/d/dataset_89de31f8-93d7-43e1-a4d5-1b0757afa41d.dat , return 0 + +Finish translating genome into proteome. Tue Aug 23 09:40:26 2022 + +Begin to phmmer search against proteome database. Tue Aug 23 09:40:26 2022 +Finish phmmer searching /usr/local/bin/pHMMs/clusters.single.faa against results/proteome/d/dataset_89de31f8-93d7-43e1-a4d5-1b0757afa41d.dat.faa , output results/hmm/d/clusters.single.faa.dataset_89de31f8-93d7-43e1-a4d5-1b0757afa41d.dat.faa + +Finish phmmer searching against proteome database. Tue Aug 23 09:40:45 2022 + +Begin to profile HMM search against proteome database. Tue Aug 23 09:40:45 2022 +Finish Profile HMM searching /usr/local/bin/pHMMs/clusters.faa.hmm against results/proteome/d/dataset_89de31f8-93d7-43e1-a4d5-1b0757afa41d.dat.faa , output results/hmm/d/clusters.faa.hmm.dataset_89de31f8-93d7-43e1-a4d5-1b0757afa41d.dat.faa + +Finish profile HMM searching against proteome database. Tue Aug 23 09:40:57 2022 +pred begins at Tue Aug 23 09:40:57 2022 +Begin addNonORFcopy at Tue Aug 23 09:40:58 2022 +Finish addNonORFcopy at Tue Aug 23 09:40:58 2022 +Begin addNonORFcopy1 at Tue Aug 23 09:40:58 2022 +Finish addNonORFcopy1 at Tue Aug 23 09:40:58 2022 +getFullIS() begins at Tue Aug 23 09:40:58 2022 +Start removing partial IS elements +Remove single-copy partial IS element with evalue > 1e-50: isLen=989 IS5 bd=[30355, 31343] orf('gi|228288719|ref|NC_012624.1|', 30399, 31298, '+') evalue=1.7e-37 +Finish removing partial IS elements +Begin removeOverlappedHits at Tue Aug 23 09:40:58 2022 +gi|228288719|ref|NC_012624.1|: no intersected hits found +Finish removeOverlappedHits at Tue Aug 23 09:40:58 2022 +Begin reading protein database at Tue Aug 23 09:40:58 2022 +Finish reading protein database at Tue Aug 23 09:40:58 2022 +Write IS elements from all sequences in d/dataset_89de31f8-93d7-43e1-a4d5-1b0757afa41d.dat into one result file under results +Write 1 IS copies to results/d/dataset_89de31f8-93d7-43e1-a4d5-1b0757afa41d.dat.csv and results/d/dataset_89de31f8-93d7-43e1-a4d5-1b0757afa41d.dat.tsv and results/d/dataset_89de31f8-93d7-43e1-a4d5-1b0757afa41d.dat.raw +Write summarized result to results/d/dataset_89de31f8-93d7-43e1-a4d5-1b0757afa41d.dat.sum +End in pred Tue Aug 23 09:40:58 2022 +Only complete IS elements are reported. +ISEScan ends at Tue Aug 23 09:40:58 2022