Mercurial > repos > pimarin > data_manager_build_amrfinderplus
changeset 1:75f79148cb06 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_amrfinderplus commit dd78d1ba0f784a0a122159c4a6d192b8d65f6a8c-dirty
| author | pimarin |
|---|---|
| date | Thu, 22 Dec 2022 09:51:41 +0000 |
| parents | 43ec3aadda50 |
| children | |
| files | data_manager/data_manager_build_amrfinderplus.py data_manager/macro.xml test-data/amrfinderplus_test_data_manager.json test-data/amrfinderplus_test_data_manager_1.json tool-data/amrfinderplus.loc tool-data/amrfinderplus.loc.sample |
| diffstat | 6 files changed, 11 insertions(+), 12 deletions(-) [+] |
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--- a/data_manager/data_manager_build_amrfinderplus.py Tue Dec 20 13:43:51 2022 +0000 +++ b/data_manager/data_manager_build_amrfinderplus.py Thu Dec 22 09:51:41 2022 +0000 @@ -3,10 +3,10 @@ import os import subprocess as sp from ftplib import FTP +from io import BytesIO +from pathlib import Path import pandas as pd -from io import BytesIO -from pathlib import Path class GetAmrFinderPlusDataManager:
--- a/data_manager/macro.xml Tue Dec 20 13:43:51 2022 +0000 +++ b/data_manager/macro.xml Thu Dec 22 09:51:41 2022 +0000 @@ -12,4 +12,4 @@ <requirement type="package" version="@PANDAS@">pandas</requirement> </requirements> </xml> -</macros> \ No newline at end of file +</macros>
--- a/test-data/amrfinderplus_test_data_manager.json Tue Dec 20 13:43:51 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -{"data_tables": {"amrfinderplus_database": [{"name": "V3.6-2020-03-20.1", "path": "amrfinderplus-db", "value": "amrfinderplus_V3.6_2020-03-20.1"}]}} \ No newline at end of file
--- a/test-data/amrfinderplus_test_data_manager_1.json Tue Dec 20 13:43:51 2022 +0000 +++ b/test-data/amrfinderplus_test_data_manager_1.json Thu Dec 22 09:51:41 2022 +0000 @@ -1,1 +1,1 @@ -{"data_tables": {"amrfinderplus_database": [{"name": "V3.10-2022-10-11.2", "path": "amrfinderplus-db", "value": "amrfinderplus_V3.10_2022-10-11.2"}]}} \ No newline at end of file +{"data_tables": {"amrfinderplus_database": [{"name": "V3.11-2022-12-19.1", "path": "amrfinderplus-db", "value": "amrfinderplus_V3.11_2022-12-19.1"}]}} \ No newline at end of file
--- a/tool-data/amrfinderplus.loc Tue Dec 20 13:43:51 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,7 +0,0 @@ -# this is a tab separated file describing the location of amrfinderplus database -# -# the columns are: -# value, name, path -# -# for example -amrfinderplus_V3.6_2020-03-20.1 V3.6-2020-03-20.1 amrfinderplus-db \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/amrfinderplus.loc.sample Thu Dec 22 09:51:41 2022 +0000 @@ -0,0 +1,7 @@ +# this is a tab separated file describing the location of amrfinderplus database +# +# the columns are: +# value, name, path +# +# for example +#amrfinderplus_V3.6_2020-03-20.1 V3.6-2020-03-20.1 amrfinderplus-db