Mercurial > repos > pimarin > data_manager_bakta
changeset 21:ddeedb302cf1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_bakta_database commit 02c1440c755820f63d70a857669b0e2ee66fe211-dirty
| author | pimarin |
|---|---|
| date | Mon, 23 Jan 2023 14:25:51 +0000 |
| parents | b165d8c97c15 |
| children | e3384e7896de |
| files | data_manager/bakta_build_database.py test-data/bakta_test.loc tool-data/bakta_database.loc |
| diffstat | 3 files changed, 3 insertions(+), 13 deletions(-) [+] |
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--- a/data_manager/bakta_build_database.py Fri Jan 13 14:26:42 2023 +0000 +++ b/data_manager/bakta_build_database.py Mon Jan 23 14:25:51 2023 +0000 @@ -78,12 +78,12 @@ def get_data_manager(self, bakta_database_info): self.bakta_table_list = self.get_data_table_format() - bakta_value = f"V{bakta_database_info['major']}." \ + bakta_name = f"V{bakta_database_info['major']}." \ f"{bakta_database_info['minor']}_" \ f"{bakta_database_info['date']}" tool_version = str(f"{bakta_database_info['software-min']['major']}." f"{bakta_database_info['software-min']['minor']}") - data_info = dict(value=bakta_value, + data_info = dict(value=bakta_name, dbkey=bakta_database_info['record'], bakta_version=tool_version, path="db")
--- a/test-data/bakta_test.loc Fri Jan 13 14:26:42 2023 +0000 +++ b/test-data/bakta_test.loc Mon Jan 23 14:25:51 2023 +0000 @@ -5,13 +5,3 @@ # # for example 7197299 V0.0_date_test 0.0 ${__HERE__} -7197299 V1.0_2022-10-12 1.4 /tmp/tmpxrkfnuec/galaxy-dev/tool-data/bakta_database/7197299 -7360139 V2.0_2022-11-25 1.5 /tmp/tmpxrkfnuec/galaxy-dev/tool-data/bakta_database/7360139 -7197299 V1.0_2022-10-12 1.4 /tmp/tmpwe9n4gyg/galaxy-dev/tool-data/bakta_database/7197299 -7360139 V2.0_2022-11-25 1.5 /tmp/tmpwe9n4gyg/galaxy-dev/tool-data/bakta_database/7360139 -V1.0_2022-10-12 7197299 1.4 /tmp/tmpw5w3lbzc/galaxy-dev/tool-data/bakta_database/V1.0_2022-10-12 -V2.0_2022-11-25 7360139 1.5 /tmp/tmpw5w3lbzc/galaxy-dev/tool-data/bakta_database/V2.0_2022-11-25 -V1.0_2022-10-12 7197299 1.4 /tmp/tmpi5flu1x0/galaxy-dev/tool-data/bakta_database/V1.0_2022-10-12 -V2.0_2022-11-25 7360139 1.5 /tmp/tmpi5flu1x0/galaxy-dev/tool-data/bakta_database/V2.0_2022-11-25 -V1.0_2022-10-12 7197299 1.4 /tmp/tmpcae9shsy/galaxy-dev/tool-data/bakta_database/7197299 -V2.0_2022-11-25 7360139 1.5 /tmp/tmpcae9shsy/galaxy-dev/tool-data/bakta_database/7360139
--- a/tool-data/bakta_database.loc Fri Jan 13 14:26:42 2023 +0000 +++ b/tool-data/bakta_database.loc Mon Jan 23 14:25:51 2023 +0000 @@ -1,7 +1,7 @@ # this is a tab separated file describing the location of bakta database # # the columns are: -# value, dbkey, bakta_version, path +# name, dbkey, bakta_version, path # # for example #V0.0_date_test 7197299 0.0 ${__HERE__}