Mercurial > repos > pimarin > data_manager_bakta

changeset 20:b165d8c97c15 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_bakta_database commit 5a014236a5042cdb4188d89e77093215bbf5f7cf
author pimarin
date Fri, 13 Jan 2023 14:26:42 +0000
parents c90380f8bbbc
children ddeedb302cf1
files data_manager_conf.xml test-data/bakta_test.loc tool-data/bakta_database.loc
diffstat 3 files changed, 5 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager_conf.xml	Fri Jan 13 14:11:30 2023 +0000
+++ b/data_manager_conf.xml	Fri Jan 13 14:26:42 2023 +0000
@@ -8,9 +8,9 @@
                 <column name="path" output_ref="output_file">
                     <move type="directory" relativize_symlinks="True">
                         <source>${path}</source>
-                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">bakta_database/${value}</target>
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">bakta_database/${dbkey}</target>
                     </move>
-                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/bakta_database/${value}</value_translation>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/bakta_database/${dbkey}</value_translation>
                     <value_translation type="function">abspath</value_translation>
                 </column>
             </output>
--- a/test-data/bakta_test.loc	Fri Jan 13 14:11:30 2023 +0000
+++ b/test-data/bakta_test.loc	Fri Jan 13 14:26:42 2023 +0000
@@ -13,3 +13,5 @@
 V2.0_2022-11-25	7360139	1.5	/tmp/tmpw5w3lbzc/galaxy-dev/tool-data/bakta_database/V2.0_2022-11-25
 V1.0_2022-10-12	7197299	1.4	/tmp/tmpi5flu1x0/galaxy-dev/tool-data/bakta_database/V1.0_2022-10-12
 V2.0_2022-11-25	7360139	1.5	/tmp/tmpi5flu1x0/galaxy-dev/tool-data/bakta_database/V2.0_2022-11-25
+V1.0_2022-10-12	7197299	1.4	/tmp/tmpcae9shsy/galaxy-dev/tool-data/bakta_database/7197299
+V2.0_2022-11-25	7360139	1.5	/tmp/tmpcae9shsy/galaxy-dev/tool-data/bakta_database/7360139
--- a/tool-data/bakta_database.loc	Fri Jan 13 14:11:30 2023 +0000
+++ b/tool-data/bakta_database.loc	Fri Jan 13 14:26:42 2023 +0000
@@ -4,4 +4,4 @@
 # value, dbkey, bakta_version, path
 #
 # for example
-#7197299	V0.0_date_test	0.0	${__HERE__}
+#V0.0_date_test	7197299	0.0	${__HERE__}