# HG changeset patch
# User pimarin
# Date 1667399726 0
# Node ID 7bd60bfa8ffcae961e9db105b1a05c4fde499bc6
# Parent  c50e8b4f74d7b2cab61a8d7542b212ed1a04f507
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bakta commit b082e89a0090f9c4b2a257bb06b7c6f141b42650-dirty

diff -r c50e8b4f74d7 -r 7bd60bfa8ffc data_manager/bakta_build_database.xml
--- a/data_manager/bakta_build_database.xml	Wed Nov 02 11:06:36 2022 +0000
+++ b/data_manager/bakta_build_database.xml	Wed Nov 02 14:35:26 2022 +0000
@@ -5,14 +5,16 @@
         <import>macro.xml</import>
     </macros>
     <expand macro="requirements"/>
-    <expand macro="version_command"/>
 
-    <command detect_errors="aggressive"><![CDATA[
+    <command detect_errors="exit_code">
+      <![CDATA[
         python '$__tool_directory__/bakta_build_database.py'
         '$output_file'
         --database_version '$database_select'
-        '$test_data_manager'
-    ]]></command>
+        #if '$test_data_manager' != ''
+            '$test_data_manager'
+        #end if
+      ]]></command>
     <inputs>
         <param name="database_select" type="select" label="Database version" help="Choose a database version to download (default latest version)">
             <option value="latest" selected="true">Latest available version</option>
diff -r c50e8b4f74d7 -r 7bd60bfa8ffc data_manager/macro.xml
--- a/data_manager/macro.xml	Wed Nov 02 11:06:36 2022 +0000
+++ b/data_manager/macro.xml	Wed Nov 02 14:35:26 2022 +0000
@@ -5,11 +5,7 @@
     <token name="@PROFILE@">21.05</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="@TOOL_VERSION@">bakta</requirement>
             <requirement type="package" version="@PYTHON_VERSION@">python</requirement>
         </requirements>
     </xml>
-    <xml name="version_command">
-        <version_command><![CDATA[bakta --version]]></version_command>
-    </xml>
 </macros>
diff -r c50e8b4f74d7 -r 7bd60bfa8ffc test-data/bakta_test_data_manager.json
--- a/test-data/bakta_test_data_manager.json	Wed Nov 02 11:06:36 2022 +0000
+++ b/test-data/bakta_test_data_manager.json	Wed Nov 02 14:35:26 2022 +0000
@@ -1,13 +1,1 @@
-{
-  "data_tables": {
-    "bakta_database": [
-      {
-        "bakta_version": "0.0",
-        "database_record": "7197299",
-        "dbkey": "date_test",
-        "path": "/tmp/tmpu_ccwfs9/job_working_directory/000/1/working/dataset_fb48f154-bf1b-4974-8759-e4f0e230e917_files/bakta_test",
-        "value": "bakta_0.0"
-      }
-    ]
-  }
-}
+{"data_tables":{"bakta_database": [{"bakta_version": "0.0","database_record": "7197299","dbkey": "date_test","path": "/tmp/tmpu_ccwfs9/job_working_directory/000/1/working/dataset_fb48f154-bf1b-4974-8759-e4f0e230e917_files/bakta_test","value": "bakta_0.0"}]}}