# HG changeset patch
# User pimarin
# Date 1666882834 0
# Node ID 68dd65d2985d514fb7ca199646bd7dbeac206ce5
# Parent  acea53e44d1b1c9aa4f0a53c6b3b515e6fdf2e9a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bakta commit 2fa443ab6c1b3513a585123edd2cdf864e5123ae-dirty

diff -r acea53e44d1b -r 68dd65d2985d data_manager/bakta_build_database.xml
--- a/data_manager/bakta_build_database.xml	Thu Oct 27 14:51:48 2022 +0000
+++ b/data_manager/bakta_build_database.xml	Thu Oct 27 15:00:34 2022 +0000
@@ -8,8 +8,10 @@
     <expand macro="version_command"/>
 
     <command detect_errors="aggressive"><![CDATA[
+        mkdir ./output_file &&
+        ln -s '$output_file' '/output_file/json_output' &&
         python '$__tool_directory__/bakta_build_database.py'
-        '$output_file'
+        '/output_file/json_output'
         --database_version '$database_select'
     ]]></command>
     <inputs>
@@ -24,7 +26,7 @@
         </param>
     </inputs>
     <outputs>
-        <data name="output_file" format="data_manager_json"/>
+        <data name="output_file" format="data_manager_json" from_work_dir="/output_file/json_output"/>
     </outputs>
     <tests>
         <!-- Test download -->