Mercurial > repos > pimarin > data_manager_bakta
comparison data_manager/bakta_build_database.py @ 21:ddeedb302cf1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_bakta_database commit 02c1440c755820f63d70a857669b0e2ee66fe211-dirty
| author | pimarin |
|---|---|
| date | Mon, 23 Jan 2023 14:25:51 +0000 |
| parents | c90380f8bbbc |
| children | e3384e7896de |
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| 20:b165d8c97c15 | 21:ddeedb302cf1 |
|---|---|
| 76 self.db_version = db_version | 76 self.db_version = db_version |
| 77 return filtered_version | 77 return filtered_version |
| 78 | 78 |
| 79 def get_data_manager(self, bakta_database_info): | 79 def get_data_manager(self, bakta_database_info): |
| 80 self.bakta_table_list = self.get_data_table_format() | 80 self.bakta_table_list = self.get_data_table_format() |
| 81 bakta_value = f"V{bakta_database_info['major']}." \ | 81 bakta_name = f"V{bakta_database_info['major']}." \ |
| 82 f"{bakta_database_info['minor']}_" \ | 82 f"{bakta_database_info['minor']}_" \ |
| 83 f"{bakta_database_info['date']}" | 83 f"{bakta_database_info['date']}" |
| 84 tool_version = str(f"{bakta_database_info['software-min']['major']}." | 84 tool_version = str(f"{bakta_database_info['software-min']['major']}." |
| 85 f"{bakta_database_info['software-min']['minor']}") | 85 f"{bakta_database_info['software-min']['minor']}") |
| 86 data_info = dict(value=bakta_value, | 86 data_info = dict(value=bakta_name, |
| 87 dbkey=bakta_database_info['record'], | 87 dbkey=bakta_database_info['record'], |
| 88 bakta_version=tool_version, | 88 bakta_version=tool_version, |
| 89 path="db") | 89 path="db") |
| 90 self.bakta_table_list["data_tables"][self.data_table_name] = [data_info] | 90 self.bakta_table_list["data_tables"][self.data_table_name] = [data_info] |
| 91 return self.bakta_table_list | 91 return self.bakta_table_list |