Mercurial > repos > pimarin > bedtools

annotate test-data/fisherBed_result1.bed @ 0:4cacc5b8001b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
author pimarin
date Thu, 23 Feb 2023 09:50:24 +0000
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4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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1 # Number of query intervals: 3
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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2 # Number of db intervals: 2
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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3 # Number of overlaps: 2
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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4 # Number of possible intervals (estimated): 34
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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5 # phyper(2 - 1, 3, 34 - 3, 2, lower.tail=F)
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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6 # Contingency Table Of Counts
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
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7 #_________________________________________
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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8 # | in -b | not in -b |
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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9 # in -a | 2 | 1 |
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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10 # not in -a | 0 | 31 |
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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11 #_________________________________________
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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12 # p-values for fisher's exact test
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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13 left right two-tail ratio
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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14 1 0.0053476 0.0053476 inf