Mercurial > repos > pimarin > bakta
diff test-data/TEST_5/TEST_5.log @ 3:eea334d9988b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
| author | pimarin |
|---|---|
| date | Thu, 22 Dec 2022 15:01:43 +0000 |
| parents | |
| children | 44fb905481f0 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/TEST_5/TEST_5.log Thu Dec 22 15:01:43 2022 +0000 @@ -0,0 +1,62 @@ + +parse genome sequences... + imported: 1 + filtered & revised: 1 + plasmids: 1 + +start annotation... +skip tRNA prediction... +skip tmRNA prediction... +skip rRNA prediction... +skip ncRNA prediction... +skip ncRNA region prediction... +skip CRISPR array prediction... +skip CDS prediction... +skip sORF prediction... +skip gap annotation... +skip oriC/T annotation... +apply feature overlap filters... +select features and create locus tags... +selected: 0 + +genome statistics: + Genome size: 1,330 bp + Contigs/replicons: 1 + GC: 45.2 % + N50: 1,330 + N ratio: 0.0 % + coding density: 0.0 % + +annotation summary: + tRNAs: 0 + tmRNAs: 0 + rRNAs: 0 + ncRNAs: 0 + ncRNA regions: 0 + CRISPR arrays: 0 + CDSs: 0 + hypotheticals: 0 + pseudogenes: 0 + signal peptides: 0 + sORFs: 0 + gaps: 0 + oriCs/oriVs: 0 + oriTs: 0 + +<<<<<<< HEAD +export annotation results to: /tmp/tmptbkng6kx/job_working_directory/000/14/working +======= +export annotation results to: /tmp/tmp4jorszj6/job_working_directory/000/14/working +>>>>>>> 195c8410c (change option for plot) + human readable TSV... + GFF3... + INSDC GenBank & EMBL... + genome sequences... + feature nucleotide sequences... + translated CDS sequences... + circular genome plot... + machine readable JSON... + genome and annotation summary... + +If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 +Annotation successfully finished in 0:00 [mm:ss].