Mercurial > repos > pimarin > bakta
diff test-data/TEST_4/TEST_4.gbff @ 3:eea334d9988b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
| author | pimarin |
|---|---|
| date | Thu, 22 Dec 2022 15:01:43 +0000 |
| parents | ca9e2125c5de |
| children | 8c7499c6f32a |
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--- a/test-data/TEST_4/TEST_4.gbff Wed Aug 17 10:29:37 2022 +0000 +++ b/test-data/TEST_4/TEST_4.gbff Thu Dec 22 15:01:43 2022 +0000 @@ -1,4 +1,4 @@ -LOCUS p2 3306 bp DNA circular BCT 17-AUG-2022 +LOCUS p2 1330 bp DNA circular BCT 19-DEC-2022 DEFINITION plasmid pOSAK1, complete sequence. ACCESSION p2 VERSION p2 @@ -7,17 +7,17 @@ ORGANISM . . COMMENT Annotated with Bakta - Software: v1.4.2 - Database: v3.0 + Software: v1.6.1 + Database: v4.0 DOI: 10.1099/mgen.0.000685 URL: github.com/oschwengers/bakta ##Genome Annotation Summary:## - Annotation Date :: 08/17/2022, 09:36:22 + Annotation Date :: 12/19/2022, 10:21:31 Annotation Pipeline :: Bakta - Annotation Software version :: v1.4.2 - Annotation Database version :: v3.0 - CDSs :: 3 + Annotation Software version :: v1.6.1 + Annotation Database version :: v4.0 + CDSs :: 2 tRNAs :: 0 tmRNAs :: 0 rRNAs :: 0 @@ -27,56 +27,36 @@ oriCs/oriVs :: 0 oriTs :: 0 gaps :: 0 + pseudogenes :: 0 FEATURES Location/Qualifiers - source 1..3306 + source 1..1330 /mol_type="genomic DNA" /plasmid="pOSAK1" - gene <2..736 - /locus_tag="DOGAIA_00005" - CDS <2..736 + gene 413..736 + /locus_tag="IHHALP_00005" + CDS 413..736 /product="hypothetical protein" - /locus_tag="DOGAIA_00005" - /translation="SSASSCSFSHMVACSSASSASSFSSSVRLWLFMNPAMLSAVCCCL - FIFLFSPFCLSSASCDYIAHHFSTVLPPVFCRRTFQSDNTVTAKKQQCFVGNSNLQTGQ - DVQLLYRAYMHAITITLVRASPRHPMSDTEPCFMTKRSGSNTRRRAISRPVRLTAEEDQ - EIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDRE - YAEVLIAITEYHRALLSRLMAD" + /locus_tag="IHHALP_00005" + /protein_id="gnl|Bakta|IHHALP_00005" + /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA + AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL + MAD" /codon_start=1 /transl_table=4 - /protein_id="gnl|Bakta|DOGAIA_00005" /inference="ab initio prediction:Prodigal:2.6" - gene complement(971..1351) - /locus_tag="DOGAIA_00010" - CDS complement(971..1351) + gene complement(join(971..1330,1..141)) + /locus_tag="IHHALP_00010" + CDS complement(join(971..1330,1..141)) /product="hypothetical protein" - /locus_tag="DOGAIA_00010" - /translation="MKKDKKYQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKK - SKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNF - DKINVNLLSKATSFALKKGIPI" + /locus_tag="IHHALP_00010" + /protein_id="gnl|Bakta|IHHALP_00010" + /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA + EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR + YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG + IPI" /codon_start=1 /transl_table=4 - /protein_id="gnl|Bakta|DOGAIA_00010" /inference="ab initio prediction:Prodigal:2.6" - gene complement(1348..2388) - /locus_tag="DOGAIA_00015" - /gene="mock1" - CDS complement(1348..2388) - /note="USERDB:MOCK1" - /product="mock hypothetical user protein 1" - /locus_tag="DOGAIA_00015" - /translation="MAQNPFKALNINIDKIESALTQNGVTNYSSNVKNERETHISGTYK - GIDFLIKLMPSGGNTTIGRASGQNNTYFDEIALIIKENCLYSDTKNFEYTIPKFSDDDR - ANLFEFLSEEGITITEDNNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQIAS - LINDFMCSILNMKEIVEQKNKEFNVDIKKETIESELHSKLPKSIDKIHEDIKKQLSCSL - IMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYFTENKPKYIIREI - HQETINGEIAEVLCECYTYWHENRHGLFHMKPGIADTKTINKLESIAIIDTVCQLIDGG - VARLKL" - /codon_start=1 - /transl_table=4 - /protein_id="gnl|Bakta|DOGAIA_00015" - /inference="ab initio prediction:Prodigal:2.6" - /EC_number="0.0.0.0" - /gene="mock1" ORIGIN 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc @@ -100,38 +80,5 @@ 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg - 1321 cttctatttg atatttttta tcttttttca taatttcaac ctagctacgc caccatctat - 1381 taattggcaa acggtatcga tgattgcgat tgattctaat ttgttaattg tcttcgtgtc - 1441 agctattcct ggtttcatat gaaacaaacc atgcctgttc tcatgccagt aagtgtagca - 1501 ttcacacaaa acttccgcta tttcaccatt tatagtttct tggtgtattt ctctgattat - 1561 atatttgggt ttgttttcag tgaagtattc gccaaggttc tttgatgatg atggattgca - 1621 aacatcatta agtatttgat atataaagcc ttctatggct cttaatgcag agaagcagta - 1681 tgttgagtaa tcttccattt cgacatctat ttttttcatt attagcgagc atgatagctg - 1741 ttttttgata tcttcatgga ttttatcgat gctttttggt agtttgctat gcaactcgga - 1801 ctcaatagtt tcttttttta tgtcaacatt aaattcttta tttttttgtt cgacaatctc - 1861 tttcatgttt agtattgagc acatgaaatc gttaatcaaa ctcgcgattt gaaggtattt - 1921 tccttggaat tgaatagagc cgcgcttgta aatttttgcc ctgaccctgt caccattgct - 1981 ggtggtcata atatattggt gtttacaatt aggatcgtta ttattatctt ctgttattgt - 2041 tatcccctct tcagaaagaa attcaaatag atttgccctg tcatcatcac tgaattttgg - 2101 aatggtgtat tcaaagttct ttgtgtctga atacaaacag ttttctttta taatcaaggc - 2161 gatttcatca aagtaagtgt tattttgccc agacgctctt ccgatagtgg tatttccgcc - 2221 tgatggcatt agttttatta agaagtctat tcctttatat gtgccagata tgtgagtttc - 2281 tctttcgttt tttacattag aggaatagtt tgtgacgcca ttctgcgtca gagcagactc - 2341 aatcttgtca atattgatat ttagtgcttt aaacgggttc tgtgccattg ggtcaatccg - 2401 ttgttttttt tgaatatgta cagatcttgt ttttttgtca acggaatagc tgttcgttga - 2461 cttgatagac cgattgattc atcatctcat aaataaagaa aaaccaccgc taccaacggt - 2521 ggttttctca aggttcgctg agctaccaac tctttgaacc aaggtaactg gcttggagga - 2581 gcgcagtcac caaaatctgt tctttcagtt tagccttaac aggtgcataa cttcaagaca - 2641 aactcctcta aatcagttac caatggctgc tgccagtggc gataagtcgt gtcttaccgg - 2701 gttggactca agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc - 2761 gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc aacagcgtga - 2821 gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaagtgg - 2881 cagggtcgga acaggagagc gcacgaggga gcttccgggg ggaaacgcct ggtatcttta - 2941 tagtcctgtc gggtttcgcc acctctggct tgagcgtcga tttttgtgat gctcgtcagg - 3001 ggggcggagc ctatggaaaa acgcctgcgg tgctggcttc ttccggtgct ttgctttttg - 3061 ctcacatgtt ctttccggct ttatcccctg attctgtgga taaccgtatt accgcctttg - 3121 agtgagctga caccgctcgc cgcagtcgaa cgaccgagcg tagcgagtca gtgagcgagg - 3181 aagcggaaga gcgccttatg tgacattttc tccttacgct ctgttgtgcc gttcggcatc - 3241 ctgccctgag cgttatatct ctgtgctatt ttctacttca aagcgtgtct gtatgctgtt - 3301 ctggag + 1321 cttctatttg //