comparison test-data/tmp/TEST_1.gbff @ 3:eea334d9988b draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty

3:eea334d9988b

<<<<<<< HEAD:tools/bakta/test-data/TEST_1/TEST_1.gbff
LOCUS       contig_1                1330 bp    DNA     circular BCT 19-DEC-2022
=======
<<<<<<< HEAD:tools/bakta/test-data/TEST_4/TEST_4.gbff
LOCUS       p2                      1330 bp    DNA     circular BCT 16-SEP-2022
DEFINITION  plasmid pOSAK1, complete sequence.
ACCESSION   p2
VERSION     p2
=======
LOCUS       contig_1                1330 bp    DNA     circular BCT 21-DEC-2022
>>>>>>> 17d4de2b8 (update bakta for plot output and to reduce number of output files):tools/bakta/test-data/tmp/TEST_1.gbff
DEFINITION  plasmid unnamed1, complete sequence.
ACCESSION   contig_1
VERSION     contig_1
>>>>>>> f1bb03fb2 (update bakta for plot output and to reduce number of output files):tools/bakta/test-data/tmp/TEST_1.gbff
KEYWORDS    .
SOURCE      None
  ORGANISM  .
            .
COMMENT     Annotated with Bakta
            Software: v1.6.1
            Database: v4.0
            DOI: 10.1099/mgen.0.000685
            URL: github.com/oschwengers/bakta
            
            ##Genome Annotation Summary:##
<<<<<<< HEAD:tools/bakta/test-data/tmp/TEST_1.gbff
<<<<<<< HEAD:tools/bakta/test-data/TEST_1/TEST_1.gbff
            Annotation Date                :: 12/19/2022, 10:20:25
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<<<<<<< HEAD:tools/bakta/test-data/TEST_4/TEST_4.gbff
            Annotation Date                :: 09/16/2022, 07:32:50
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            Annotation Date                :: 12/21/2022, 14:34:39
>>>>>>> f1bb03fb2 (update bakta for plot output and to reduce number of output files):tools/bakta/test-data/tmp/TEST_1.gbff
>>>>>>> 17d4de2b8 (update bakta for plot output and to reduce number of output files):tools/bakta/test-data/tmp/TEST_1.gbff
=======
            Annotation Date                :: 12/21/2022, 19:53:31
>>>>>>> 195c8410c (change option for plot):tools/bakta/test-data/TEST_1/TEST_1.gbff
            Annotation Pipeline            :: Bakta
            Annotation Software version    ::  v1.6.1
            Annotation Database version    ::  v4.0
            CDSs                           ::     2
            tRNAs                          ::     0
            tmRNAs                         ::     0
            rRNAs                          ::     0
            ncRNAs                         ::     0
            regulatory ncRNAs              ::     0
            CRISPR Arrays                  ::     0
            oriCs/oriVs                    ::     0
            oriTs                          ::     0
            gaps                           ::     0
            pseudogenes                    ::     0
FEATURES             Location/Qualifiers
     source          1..1330
                     /mol_type="genomic DNA"
                     /plasmid="unnamed1"
     gene            413..736
                     /locus_tag="IHHALP_00005"
     CDS             413..736
                     /product="hypothetical protein"
                     /locus_tag="IHHALP_00005"
                     /protein_id="gnl|Bakta|IHHALP_00005"
                     /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
                     AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
                     MAD"
                     /codon_start=1
                     /transl_table=11
                     /inference="ab initio prediction:Prodigal:2.6"
     gene            complement(join(971..1330,1..141))
                     /locus_tag="IHHALP_00010"
     CDS             complement(join(971..1330,1..141))
                     /product="hypothetical protein"
                     /locus_tag="IHHALP_00010"
                     /protein_id="gnl|Bakta|IHHALP_00010"
                     /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
                     EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
                     YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
                     IPI"
                     /codon_start=1
                     /transl_table=11
                     /inference="ab initio prediction:Prodigal:2.6"
ORIGIN
        1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc
       61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc
      121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg
      181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt
      241 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt
      301 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac
      361 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa
      421 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga
      481 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt
      541 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga
      601 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga
      661 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag
      721 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt
      781 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga
      841 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc
      901 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc
      961 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa
     1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat
     1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat
     1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa
     1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc
     1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg
     1321 cttctatttg
//