Mercurial > repos > pimarin > bakta

annotate test-data/TEST_4/TEST_4.gff3 @ 2:ca9e2125c5de draft

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"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit fe1cdf884df206d842be4f0768acb06b0bbcf56f"
author pimarin
date Wed, 17 Aug 2022 10:29:37 +0000
parents 4d315de96666
children eea334d9988b
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4d315de96666 "planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit bf30715c881a622947d3d099d7a22e323e2ceef3-dirty"
pimarin
parents:
diff changeset
1 ##gff-version 3
4d315de96666 "planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit bf30715c881a622947d3d099d7a22e323e2ceef3-dirty"
pimarin
parents:
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2 ##feature-ontology https://github.com/The-Sequence-Ontology/SO-Ontologies/blob/v3.1/so.obo
4d315de96666 "planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit bf30715c881a622947d3d099d7a22e323e2ceef3-dirty"
pimarin
parents:
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3 # Annotated with Bakta
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ca9e2125c5de "planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit fe1cdf884df206d842be4f0768acb06b0bbcf56f"
pimarin
parents: 0
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4 # Software: v1.4.2
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4d315de96666 "planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit bf30715c881a622947d3d099d7a22e323e2ceef3-dirty"
pimarin
parents:
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5 # Database: v3.0
4d315de96666 "planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit bf30715c881a622947d3d099d7a22e323e2ceef3-dirty"
pimarin
parents:
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6 # DOI: 10.1099/mgen.0.000685
4d315de96666 "planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit bf30715c881a622947d3d099d7a22e323e2ceef3-dirty"
pimarin
parents:
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7 # URL: github.com/oschwengers/bakta
4d315de96666 "planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit bf30715c881a622947d3d099d7a22e323e2ceef3-dirty"
pimarin
parents:
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8 ##sequence-region p2 1 3306
4d315de96666 "planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit bf30715c881a622947d3d099d7a22e323e2ceef3-dirty"
pimarin
parents:
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9 p2 Bakta region 1 3306 . + . ID=p2;Name=p2;Is_circular=true
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ca9e2125c5de "planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit fe1cdf884df206d842be4f0768acb06b0bbcf56f"
pimarin
parents: 0
diff changeset
10 p2 Prodigal gene 2 736 . + . ID=DOGAIA_00005_gene;locus_tag=DOGAIA_00005
ca9e2125c5de "planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit fe1cdf884df206d842be4f0768acb06b0bbcf56f"
pimarin
parents: 0
diff changeset
11 p2 Prodigal CDS 2 736 . + 0 ID=DOGAIA_00005;Name=hypothetical protein;locus_tag=DOGAIA_00005;product=hypothetical protein;Parent=DOGAIA_00005_gene;inference=ab initio prediction:Prodigal:2.6
ca9e2125c5de "planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit fe1cdf884df206d842be4f0768acb06b0bbcf56f"
pimarin
parents: 0
diff changeset
12 p2 Prodigal gene 971 1351 . - . ID=DOGAIA_00010_gene;locus_tag=DOGAIA_00010
ca9e2125c5de "planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit fe1cdf884df206d842be4f0768acb06b0bbcf56f"
pimarin
parents: 0
diff changeset
13 p2 Prodigal CDS 971 1351 . - 0 ID=DOGAIA_00010;Name=hypothetical protein;locus_tag=DOGAIA_00010;product=hypothetical protein;Parent=DOGAIA_00010_gene;inference=ab initio prediction:Prodigal:2.6
ca9e2125c5de "planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit fe1cdf884df206d842be4f0768acb06b0bbcf56f"
pimarin
parents: 0
diff changeset
14 p2 Prodigal gene 1348 2388 . - . ID=DOGAIA_00015_gene;locus_tag=DOGAIA_00015;gene=mock1
ca9e2125c5de "planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit fe1cdf884df206d842be4f0768acb06b0bbcf56f"
pimarin
parents: 0
diff changeset
15 p2 Prodigal CDS 1348 2388 . - 0 ID=DOGAIA_00015;Name=mock hypothetical user protein 1;locus_tag=DOGAIA_00015;product=mock hypothetical user protein 1;gene=mock1;Parent=DOGAIA_00015_gene;inference=ab initio prediction:Prodigal:2.6;Note=USERDB:MOCK1;ec_number=0.0.0.0