Mercurial > repos > pimarin > abromicsextractor
view test-data/bracken/bracken_alone_output.json @ 0:a157d29ef11d draft default tip
planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
author | pimarin |
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date | Mon, 15 May 2023 14:20:18 +0000 |
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[{"analysis_software_name": "bracken", "results": {"bracken": {"name": "bracken_report", "file_path": "test/data/dummy/bracken/bracken_report.tsv", "hid": "", "content": [{"name": "Enterococcus_faecalis", "taxonomy_id": 1351, "taxonomy_lvl": "S", "kraken_assigned_reads": 63, "added_reads": 21, "new_est_reads": 84, "fraction_total_reads": 0.88421}, {"name": "Enterococcus_faecium", "taxonomy_id": 1352, "taxonomy_lvl": "S", "kraken_assigned_reads": 4, "added_reads": 0, "new_est_reads": 4, "fraction_total_reads": 0.04211}, {"name": "Enterococcus_casseliflavus", "taxonomy_id": 37734, "taxonomy_lvl": "S", "kraken_assigned_reads": 1, "added_reads": 0, "new_est_reads": 1, "fraction_total_reads": 0.01053}, {"name": "Streptococcus_cristatus", "taxonomy_id": 45634, "taxonomy_lvl": "S", "kraken_assigned_reads": 1, "added_reads": 0, "new_est_reads": 1, "fraction_total_reads": 0.01053}, {"name": "Lactococcus_garvieae", "taxonomy_id": 1363, "taxonomy_lvl": "S", "kraken_assigned_reads": 1, "added_reads": 0, "new_est_reads": 1, "fraction_total_reads": 0.01053}, {"name": "Staphylococcus_aureus", "taxonomy_id": 1280, "taxonomy_lvl": "S", "kraken_assigned_reads": 1, "added_reads": 0, "new_est_reads": 1, "fraction_total_reads": 0.01053}, {"name": "Bacillus_oleronius", "taxonomy_id": 38875, "taxonomy_lvl": "S", "kraken_assigned_reads": 1, "added_reads": 0, "new_est_reads": 1, "fraction_total_reads": 0.01053}]}}}]