A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2023-06-14, 11:34
based on data in:
/home/pierre/galaxy/database/jobs_directory/002/2012/working/multiqc_WDir
General Statistics
Showing 2/2 rows and 6/8 columns.Sample Name | N50 (Kbp) | Length (Mbp) | % Duplication | GC content | % PF | % Adapter |
---|---|---|---|---|---|---|
9_Enterococcus_faecium_S20_L001_R1_fastq_gz | 0.0% | 37.6% | 99.1% | 64.8% | ||
Shovill_on_data_4_and_data_3__Contigs | 4.1Kbp | 0.0Mbp |
QUAST
QUAST is a quality assessment tool for genome assemblies, written by the Center for Algorithmic Biotechnology.
Assembly Statistics
Sample Name | N50 (Kbp) | L50 (K) | Largest contig (Kbp) | Length (Mbp) |
---|---|---|---|---|
Shovill_on_data_4_and_data_3__Contigs | 4.1Kbp | 0.0K | 7.4Kbp | 0.0Mbp |
Number of Contigs
This plot shows the number of contigs found for each assembly, broken down by length.
fastp
fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...)
Filtered Reads
Filtering statistics of sampled reads.
Insert Sizes
Insert size estimation of sampled reads.
Sequence Quality
Average sequencing quality over each base of all reads.
GC Content
Average GC content over each base of all reads.
N content
Average N content over each base of all reads.