Mercurial > repos > pieterlukasse > prims_proteomics
changeset 17:bc9300d88f1a
Merge
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Mon, 30 Dec 2013 14:57:01 +0100 |
| parents | 2479eff53fc8 (diff) d3569edd995c (current diff) |
| children | b0f00a32508c |
| files | |
| diffstat | 8 files changed, 10 insertions(+), 10 deletions(-) [+] |
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--- a/csv2apml.xml Mon Dec 30 08:50:30 2013 -0500 +++ b/csv2apml.xml Mon Dec 30 14:57:01 2013 +0100 @@ -1,4 +1,4 @@ -<tool name="Csv2Apml" id="csv2apml" version="1.0.1"> +<tool name="Csv2Apml" id="csv2apml" version="1.0.2"> <description>Converts MS/MS data in CSV format to APML format</description> <!-- For remote debugging start you listener on port 8000 and use the following as command interpreter:
--- a/msfilt.xml Mon Dec 30 08:50:30 2013 -0500 +++ b/msfilt.xml Mon Dec 30 14:57:01 2013 +0100 @@ -1,4 +1,4 @@ -<tool name="MsFilt" id="msfilt" version="1.0.1"> +<tool name="MsFilt" id="msfilt" version="1.0.2"> <description>Filters annotations based MS/MS peptide identification and annotation quality measures</description> <!-- For remote debugging start you listener on port 8000 and use the following as command interpreter:
--- a/napq.xml Mon Dec 30 08:50:30 2013 -0500 +++ b/napq.xml Mon Dec 30 14:57:01 2013 +0100 @@ -1,5 +1,5 @@ -<tool name="NapQ" id="napq" version="1.0.2"> - <description>[[experimental]]'no alignment'(alignment-free) peptide quantification</description> +<tool name="NapQ" id="napq" version="0.0.1"> + <description>'no alignment'(alignment-free) peptide quantification</description> <!-- For remote debugging start you listener on port 8000 and use the following as command interpreter: java -jar -Xdebug -Xrunjdwp:transport=dt_socket,address=D0100564.wurnet.nl:8000
--- a/progenesisconverter.xml Mon Dec 30 08:50:30 2013 -0500 +++ b/progenesisconverter.xml Mon Dec 30 14:57:01 2013 +0100 @@ -1,4 +1,4 @@ -<tool name="ProgenesisConverter" id="progenesisconv1" version="1.0.1"> +<tool name="ProgenesisConverter" id="progenesisconv1" version="1.0.2"> <description>Converts Progenesis aligned feature lists in CSV format to APML</description> <!-- For remote debugging start you listener on port 8000 and use the following as command interpreter:
--- a/quantifere.xml Mon Dec 30 08:50:30 2013 -0500 +++ b/quantifere.xml Mon Dec 30 14:57:01 2013 +0100 @@ -1,4 +1,4 @@ -<tool name="Quantifere" id="quantifere1" version="1.0.1"> +<tool name="Quantifere" id="quantifere1" version="1.0.2"> <description>Protein Inference by Peptide Quantification patterns</description> <!-- For remote debugging start you listener on port 8000 and use the following as command interpreter: @@ -6,7 +6,7 @@ ////////////////////////// --> <command interpreter="java -jar "> - Quantifere.jar + Quantifere.jar -annotatedQuantificationFilesList $annotatedQuantificationFilesList -identificationFilesList $identificationFilesList -statisticalMeasuresConfigFile $statisticalMeasuresConfigFile
--- a/quantiline.xml Mon Dec 30 08:50:30 2013 -0500 +++ b/quantiline.xml Mon Dec 30 14:57:01 2013 +0100 @@ -1,4 +1,4 @@ -<tool name="Quantiline" id="quantiline1" version="1.0.1"> +<tool name="Quantiline" id="quantiline1" version="1.0.2"> <description>Labeled ms/ms data pre-processing for Protein Quantification (and Inference) pipelines</description> <!-- For remote debugging start you listener on port 8000 and use the following as command interpreter:
--- a/repository_dependencies.xml Mon Dec 30 08:50:30 2013 -0500 +++ b/repository_dependencies.xml Mon Dec 30 14:57:01 2013 +0100 @@ -1,5 +1,5 @@ <?xml version="1.0"?> <repositories description="Required proteomics dependencies."> <repository toolshed="http://toolshed.g2.bx.psu.edu" name="proteomics_datatypes" owner="iracooke" changeset_revision="09b89b345de2" /> - <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="proteomics_datatypes" owner="iracooke" changeset_revision="7101f7e4b00b" /> + <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="proteomics_datatypes" owner="iracooke" changeset_revision="7101f7e4b00b" /> </repositories>
--- a/sedmat.xml Mon Dec 30 08:50:30 2013 -0500 +++ b/sedmat.xml Mon Dec 30 14:57:01 2013 +0100 @@ -1,4 +1,4 @@ -<tool name="SedMat" id="sedmat1" version="1.0.1"> +<tool name="SedMat" id="sedmat1" version="1.0.2"> <description>Matches MS and MS/MS results</description> <!-- For remote debugging start you listener on port 8000 and use the following as command interpreter: