Mercurial > repos > pieterlukasse > prims_metabolomics

diff xcms_differential_analysis.r @ 2:627ddbd15823

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author pieter.lukasse@wur.nl
date Fri, 24 Oct 2014 16:44:03 +0200
parents 071a185c2ced
children ddef5534c294
line wrap: on
line diff
--- a/xcms_differential_analysis.r	Fri Oct 24 12:52:56 2014 +0200
+++ b/xcms_differential_analysis.r	Fri Oct 24 16:44:03 2014 +0200
@@ -30,6 +30,7 @@
 
 tryCatch(
         {
+        	library(metaMS)
         	library(xcms)
 	        #library("R2HTML")
 	
@@ -47,6 +48,8 @@
 			# report
 			dir.create(file.path(args.htmlReportFile.files_path), showWarnings = FALSE)
 			# setwd(file.path(args.htmlReportFile.files_path))
+			file.rename("fig_eic", paste(args.htmlReportFile.files_path, "/fig_eic"))
+			
 			
 			cat("<html><body><h1>Differential analysis report</h1>", file= args.htmlReportFile)
 			#HTML(reporttab[1:args.topcount,], file= args.htmlReportFile)