Mercurial > repos > pieterlukasse > prims_metabolomics
diff test/test_library_lookup.py @ 1:071a185c2ced
new tools
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Fri, 24 Oct 2014 12:52:56 +0200 |
| parents | 4b94bb2d381c |
| children |
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--- a/test/test_library_lookup.py Thu Jan 16 13:22:38 2014 +0100 +++ b/test/test_library_lookup.py Fri Oct 24 12:52:56 2014 +0200 @@ -27,7 +27,7 @@ Tests the 'create_lookup_table' function ''' column_type = 'Capillary' - polarity = 'Semi-standard non-polar' + polarity = 'Semi-standard non-polar6' lookup_dict = library_lookup.create_lookup_table(self.ri_database, column_type, polarity) self.assertFalse(False in [res[4] == 'Capillary' for res in lookup_dict['4177166']]) self.assertEqual(['C51276336', '2,6-Dimethyl-octa-1,7-dien-3,6-diol', 'C10H18O2', @@ -147,9 +147,9 @@ ''' Tests the match_library.py functionality ''' - riqc_libs_dir = resource_filename(__name__, "../repositories") + riqc_libs_dir = resource_filename(__name__, "../repositories/PRIMS-metabolomics/RI_DB_libraries") get_library_files_output = match_library.get_directory_files(riqc_libs_dir) - self.assertEqual(4, len(get_library_files_output)) + self.assertEqual(2, len(get_library_files_output)) self.assertEqual("Library_RI_DB_capillary_columns-noDuplicates", get_library_files_output[0][0]) #TODO change assert below to assert that the result is a file, so the test can run on other dirs as well: #self.assertEqual("E:\\workspace\\PRIMS-metabolomics\\python-tools\\tools\\GCMS\\test\\data\\riqc_libs\\RI DB library (capillary columns) Dec.2012.txt", get_library_files_output[0][1])