Mercurial > repos > pieterlukasse > prims_metabolomics
comparison test/integration_tests.py @ 1:071a185c2ced
new tools
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Fri, 24 Oct 2014 12:52:56 +0200 |
| parents | 4b94bb2d381c |
| children |
comparison
equal
deleted
inserted
replaced
| 0:4b94bb2d381c | 1:071a185c2ced |
|---|---|
| 117 outfile_base = os.path.join(outdir, 'produced_library_lookup_ADVANCED') | 117 outfile_base = os.path.join(outdir, 'produced_library_lookup_ADVANCED') |
| 118 outfile_txt = outfile_base + '.txt' | 118 outfile_txt = outfile_base + '.txt' |
| 119 | 119 |
| 120 #Build up arguments and run | 120 #Build up arguments and run |
| 121 input_txt = resource_filename(__name__, "data/integration/NIST_identification_results_tabular.txt") | 121 input_txt = resource_filename(__name__, "data/integration/NIST_identification_results_tabular.txt") |
| 122 library = resource_filename(__name__, "data/integration/Library_RI_DB_capillary_columns-noDuplicates.txt") | 122 library = resource_filename(__name__, "../repositories/PRIMS-metabolomics/RI_DB_libraries/Library_RI_DB_capillary_columns-noDuplicates.txt") |
| 123 regress_model = resource_filename(__name__, "data/integration/regression_MODEL_for_columns.txt") | 123 regress_model = resource_filename(__name__, "data/integration/regression_MODEL_for_columns.txt") |
| 124 sys.argv = ['test', | 124 sys.argv = ['test', |
| 125 library, | 125 library, |
| 126 input_txt, | 126 input_txt, |
| 127 'Capillary', | 127 'Capillary', |