Mercurial > repos > peterjc > venn_list
changeset 11:842a790502bb draft
v0.0.8; fixed missing rpy error; relaxed test
| author | peterjc |
|---|---|
| date | Thu, 30 Apr 2015 05:23:12 -0400 |
| parents | c2ad70398fda |
| children | 9c751610e4a5 |
| files | tools/venn_list/README.rst tools/venn_list/tool_dependencies.xml |
| diffstat | 2 files changed, 1 insertions(+), 9 deletions(-) [+] |
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--- a/tools/venn_list/README.rst Wed Apr 29 11:02:56 2015 -0400 +++ b/tools/venn_list/README.rst Thu Apr 30 05:23:12 2015 -0400 @@ -68,7 +68,6 @@ v0.0.8 - Reorder XML elements (internal change only). - Fixed and improved error handling when rpy is not available. - Test output relaxed to cope with more variation in PDF output. - - Declare Biopython dependency via the Tool Shed. ======= ====================================================================== @@ -84,7 +83,7 @@ For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use the following command from the Galaxy root folder:: - $ tar -czf venn_list.tar.gz tools/venn_list/README.rst tools/venn_list/venn_list.* tools/venn_list/tool_dependencies.xml test-data/magic.pdf test-data/venn_list.tabular test-data/rhodopsin_proteins.fasta + $ tar -czf venn_list.tar.gz tools/venn_list/README.rst tools/venn_list/venn_list.* test-data/magic.pdf test-data/venn_list.tabular test-data/rhodopsin_proteins.fasta Check this worked:: @@ -92,7 +91,6 @@ tools/venn_list/README.rst tools/venn_list/venn_list.py tools/venn_list/venn_list.xml - tools/venn_list/tool_dependencies.xml test-data/magic.pdf test-data/venn_list.tabular test-data/rhodopsin_proteins.fasta
--- a/tools/venn_list/tool_dependencies.xml Wed Apr 29 11:02:56 2015 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="biopython" version="1.65"> - <repository changeset_revision="f8d72690eeae" name="package_biopython_1_65" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> -</tool_dependency>