diff tools/protein_analysis/rxlr_motifs.xml @ 32:20da7f48b56f draft

"Check this is up to date with all 2020 changes"

--- a/tools/protein_analysis/rxlr_motifs.xml	Thu Sep 21 11:23:01 2017 -0400
+++ b/tools/protein_analysis/rxlr_motifs.xml	Thu Jun 17 08:19:32 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="rxlr_motifs" name="RXLR Motifs" version="0.0.14">
+<tool id="rxlr_motifs" name="RXLR Motifs" version="0.0.15">
     <description>Find RXLR Effectors of Plant Pathogenic Oomycetes</description>
     <requirements>
         <!-- Need SignalP for all the models -->
@@ -138,37 +138,37 @@
 Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz and Leighton Pritchard (2013).
 Galaxy tools and workflows for sequence analysis with applications
 in molecular plant pathology. PeerJ 1:e167
-http://dx.doi.org/10.7717/peerj.167
+https://doi.org/10.7717/peerj.167
 
 Stephen C. Whisson, Petra C. Boevink, Lucy Moleleki, Anna O. Avrova, Juan G. Morales, Eleanor M. Gilroy, Miles R. Armstrong, Severine Grouffaud, Pieter van West, Sean Chapman, Ingo Hein, Ian K. Toth, Leighton Pritchard and Paul R. J. Birch (2007).
 A translocation signal for delivery of oomycete effector proteins into host plant cells.
 Nature 450:115-118.
-http://dx.doi.org/10.1038/nature06203
+https://doi.org/10.1038/nature06203
 
 Joe Win, William Morgan, Jorunn Bos, Ksenia V. Krasileva, Liliana M. Cano, Angela Chaparro-Garcia, Randa Ammar, Brian J. Staskawicz and Sophien Kamoun (2007).
 Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes.
 The Plant Cell 19:2349-2369.
-http://dx.doi.org/10.1105/tpc.107.051037
+https://doi.org/10.1105/tpc.107.051037
 
 Souvik Bhattacharjee, N. Luisa Hiller, Konstantinos Liolios, Joe Win, Thirumala-Devi Kanneganti, Carolyn Young, Sophien Kamoun and Kasturi Haldar (2006).
 The malarial host-targeting signal is conserved in the Irish potato famine pathogen.
 PLoS Pathogens, 2(5):e50.
-http://dx.doi.org/10.1371/journal.ppat.0020050
+https://doi.org/10.1371/journal.ppat.0020050
 
 Trudy A. Torto, Shuang Li, Allison Styer, Edgar Huitema, Antonino Testa, Neil A.R. Gow, Pieter van West and Sophien Kamoun (2003).
 EST mining and functional expression assays identify extracellular effector proteins from the plant pathogen *phytophthora*.
 Genome Research, 13:1675-1685.
-http://dx.doi.org/10.1101/gr.910003
+https://doi.org/10.1101/gr.910003
 
 Sean R. Eddy (1998).
 Profile hidden Markov models.
 Bioinformatics, 14(9):755–763.
-http://dx.doi.org/10.1093/bioinformatics/14.9.755
+https://doi.org/10.1093/bioinformatics/14.9.755
 
 Nielsen, Engelbrecht, Brunak and von Heijne (1997).
 Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.
 Protein Engineering, 10:1-6.
-http://dx.doi.org/10.1093/protein/10.1.1
+https://doi.org/10.1093/protein/10.1.1
 
 This wrapper is available to install into other Galaxy Instances via the Galaxy
 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp