Mercurial > repos > peterjc > tmhmm_and_signalp
comparison tools/protein_analysis/tmhmm2.py @ 34:7a2e20baacee draft default tip
"v0.2.13 - Python 3 fix for raising StopIteration"
| author | peterjc |
|---|---|
| date | Thu, 17 Jun 2021 17:58:23 +0000 |
| parents | 20da7f48b56f |
| children |
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| 33:4fcc441269f5 | 34:7a2e20baacee |
|---|---|
| 50 from seq_analysis_utils import run_jobs, split_fasta, thread_count | 50 from seq_analysis_utils import run_jobs, split_fasta, thread_count |
| 51 | 51 |
| 52 FASTA_CHUNK = 500 | 52 FASTA_CHUNK = 500 |
| 53 | 53 |
| 54 if "-v" in sys.argv or "--version" in sys.argv: | 54 if "-v" in sys.argv or "--version" in sys.argv: |
| 55 sys.exit("TMHMM wrapper version 0.0.16") | 55 sys.exit("TMHMM wrapper version 0.0.17") |
| 56 | 56 |
| 57 if len(sys.argv) != 4: | 57 if len(sys.argv) != 4: |
| 58 sys.exit( | 58 sys.exit( |
| 59 "Require three arguments, number of threads (int), input protein " | 59 "Require three arguments, number of threads (int), input protein " |
| 60 "FASTA file & output tabular file" | 60 "FASTA file & output tabular file" |