Mercurial > repos > peterjc > tmhmm_and_signalp
comparison tools/protein_analysis/signalp3.py @ 34:7a2e20baacee draft default tip
"v0.2.13 - Python 3 fix for raising StopIteration"
| author | peterjc |
|---|---|
| date | Thu, 17 Jun 2021 17:58:23 +0000 |
| parents | 20da7f48b56f |
| children |
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| 33:4fcc441269f5 | 34:7a2e20baacee |
|---|---|
| 65 | 65 |
| 66 FASTA_CHUNK = 500 | 66 FASTA_CHUNK = 500 |
| 67 MAX_LEN = 6000 # Found by trial and error | 67 MAX_LEN = 6000 # Found by trial and error |
| 68 | 68 |
| 69 if "-v" in sys.argv or "--version" in sys.argv: | 69 if "-v" in sys.argv or "--version" in sys.argv: |
| 70 print("SignalP Galaxy wrapper version 0.0.19") | 70 print("SignalP Galaxy wrapper version 0.0.20") |
| 71 sys.exit(os.system("signalp -version")) | 71 sys.exit(os.system("signalp -version")) |
| 72 | 72 |
| 73 if len(sys.argv) not in [6, 8]: | 73 if len(sys.argv) not in [6, 8]: |
| 74 sys.exit( | 74 sys.exit( |
| 75 "Require five (or 7) arguments, organism, truncate, threads, " | 75 "Require five (or 7) arguments, organism, truncate, threads, " |