comparison tools/protein_analysis/rxlr_motifs.xml @ 25:41a42022f815 draft

Uploaded v0.2.6, embedded citations

24:ee10017fcd80

<tool id="rxlr_motifs" name="RXLR Motifs" version="0.0.7">
    <description>Find RXLR Effectors of Plant Pathogenic Oomycetes</description>
    <command interpreter="python">
      rxlr_motifs.py $fasta_file 8 $model $tabular_file
      ##I want the number of threads to be a Galaxy config option...
    </command>
    <stdio>
        <!-- Anything other than zero is an error -->
        <exit_code range="1:" />
        <exit_code range=":-1" />

http://dx.doi.org/10.1093/protein/10.1.1

This wrapper is available to install into other Galaxy Instances via the Galaxy
Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp
    </help>
</tool>

25:41a42022f815

<tool id="rxlr_motifs" name="RXLR Motifs" version="0.0.9">
    <description>Find RXLR Effectors of Plant Pathogenic Oomycetes</description>
    <command interpreter="python">
      rxlr_motifs.py "$fasta_file" "\$GALAXY_SLOTS" $model "$tabular_file"
    </command>
    <stdio>
        <!-- Anything other than zero is an error -->
        <exit_code range="1:" />
        <exit_code range=":-1" />

http://dx.doi.org/10.1093/protein/10.1.1

This wrapper is available to install into other Galaxy Instances via the Galaxy
Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp
    </help>
    <citations>
        <citation type="doi">10.7717/peerj.167</citation>
        <!-- TODO - select from these citations depending on method picked -->
        <citation type="doi">10.1038/nature06203</citation>
        <citation type="doi">10.1105/tpc.107.051037</citation>
        <citation type="doi">10.1371/journal.ppat.0020050</citation>
        <citation type="doi">10.1101/gr.910003</citation>
        <citation type="doi">10.1093/bioinformatics/14.9.755</citation>
        <citation type="doi">10.1093/protein/10.1.1</citation>
    </citations>
</tool>