Mercurial > repos > peterjc > tmhmm_and_signalp
comparison tools/protein_analysis/promoter2.py @ 28:22e71e53f534 draft
Capture version of promoter2
| author | peterjc |
|---|---|
| date | Tue, 01 Sep 2015 08:24:49 -0400 |
| parents | 20139cb4c844 |
| children | 3cb02adf4326 |
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| 27:9e36a1b9302d | 28:22e71e53f534 |
|---|---|
| 31 import commands | 31 import commands |
| 32 import tempfile | 32 import tempfile |
| 33 from seq_analysis_utils import sys_exit, split_fasta, run_jobs, thread_count | 33 from seq_analysis_utils import sys_exit, split_fasta, run_jobs, thread_count |
| 34 | 34 |
| 35 FASTA_CHUNK = 500 | 35 FASTA_CHUNK = 500 |
| 36 | |
| 37 if "-v" in sys.argv or "--version" in sys.argv: | |
| 38 sys.exit(os.system("promoter -V")) | |
| 36 | 39 |
| 37 if len(sys.argv) != 4: | 40 if len(sys.argv) != 4: |
| 38 sys_exit("Require three arguments, number of threads (int), input DNA FASTA file & output tabular file. " | 41 sys_exit("Require three arguments, number of threads (int), input DNA FASTA file & output tabular file. " |
| 39 "Got %i arguments." % (len(sys.argv)-1)) | 42 "Got %i arguments." % (len(sys.argv)-1)) |
| 40 | 43 |