# HG changeset patch
# User peterjc
# Date 1378896081 14400
# Node ID ddc359713c623c80d8086d1f0ad2e00341bee093
# Parent  87086e8e9bb88f7547f4f530548aa63eee678774
Uploaded v0.0.7, citation information

diff -r 87086e8e9bb8 -r ddc359713c62 tools/filters/repository_dependencies.xml
--- a/tools/filters/repository_dependencies.xml	Mon Jul 29 09:12:39 2013 -0400
+++ b/tools/filters/repository_dependencies.xml	Wed Sep 11 06:41:21 2013 -0400
@@ -2,5 +2,5 @@
 <repositories description="This requires Biopython as a dependency.">
 <!-- Leave out the tool shed and revision to get the current
      tool shed and latest revision at the time of upload -->
-<repository changeset_revision="627c7b41b970" name="package_biopython_1_61" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+<repository changeset_revision="54e5c64b0460" name="package_biopython_1_61" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" />
 </repositories>
diff -r 87086e8e9bb8 -r ddc359713c62 tools/filters/seq_select_by_id.rst
--- a/tools/filters/seq_select_by_id.rst	Mon Jul 29 09:12:39 2013 -0400
+++ b/tools/filters/seq_select_by_id.rst	Wed Sep 11 06:41:21 2013 -0400
@@ -70,6 +70,7 @@
          - Automatic installation of Biopython dependency.
          - Use reStructuredText for this README file.
          - Adopt standard MIT License.
+v0.0.7   - Updated citation information (Cock et al. 2013).
 ======= ======================================================================
 
 
diff -r 87086e8e9bb8 -r ddc359713c62 tools/filters/seq_select_by_id.xml
--- a/tools/filters/seq_select_by_id.xml	Mon Jul 29 09:12:39 2013 -0400
+++ b/tools/filters/seq_select_by_id.xml	Wed Sep 11 06:41:21 2013 -0400
@@ -49,11 +49,18 @@
 WARNING: If you have any duplicates in the tabular file identifiers, you will get
 duplicate sequences in the output.
 
-**Citation**
+**References**
+
+If you use this Galaxy tool in work leading to a scientific publication please
+cite the following papers:
 
-This tool uses Biopython to read, write and index sequence files. If you use
-this tool in scientific work leading to a publication, please cite the
-Biopython application note (and Galaxy too of course):
+Peter Cock, Bjoern Gruening, Konrad Paszkiewicz and Leighton Pritchard (2013).
+Galaxy tools and workflows for sequence analysis with applications
+in molecular plant pathology. PeerJ 1:e167
+http://dx.doi.org/10.7717/peerj.167
+
+This tool uses Biopython to read, write and index sequence files, so you may
+also wish to cite the Biopython application note (and Galaxy too of course):
 
 Cock et al 2009. Biopython: freely available Python tools for computational
 molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3.