comparison tools/primers/seq_primer_clip.xml @ 2:bd151574bbf3 draft

Uploaded v0.0.10, README.rst, MIT licence, biopython dependency

1:06e6112091aa

<tool id="seq_primer_clip" name="Primer clip sequences" version="0.0.9">
    <description>Trim off 5' or 3' primers</description>
    <version_command interpreter="python">seq_primer_clip.py --version</version_command>   
    <command interpreter="python">
seq_primer_clip.py $input_file $input_file.ext $primer_fasta $primer_type $mm $min_len $keep_negatives $output_file
    </command>
    <stdio>

Cock et al 2009. Biopython: freely available Python tools for computational
molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3.
http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878.

    </help>
</tool>

2:bd151574bbf3

<tool id="seq_primer_clip" name="Primer clip sequences" version="0.0.10">
    <description>Trim off 5' or 3' primers</description>
    <requirements>
        <requirement type="python-module">Bio</requirement>
    </requirements>
    <version_command interpreter="python">seq_primer_clip.py --version</version_command>   
    <command interpreter="python">
seq_primer_clip.py $input_file $input_file.ext $primer_fasta $primer_type $mm $min_len $keep_negatives $output_file
    </command>
    <stdio>

Cock et al 2009. Biopython: freely available Python tools for computational
molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3.
http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878.

This tool is available to install into other Galaxy Instances via the Galaxy
Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/seq_primer_clip 
    </help>
</tool>