# HG changeset patch # User peterjc # Date 1486657626 18000 # Node ID 69decf35d578396f5ed250f86fa5bb3c796dda99 # Parent 681ed62af8ac31e63cbfa7055d59cd70f0c7ea31 planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_filter_by_mapping commit 5fb6ee31f33e8e24c1ae5d56c93ac3e0157dad72-dirty diff -r 681ed62af8ac -r 69decf35d578 tools/seq_filter_by_mapping/seq_filter_by_mapping.py --- a/tools/seq_filter_by_mapping/seq_filter_by_mapping.py Fri Feb 03 12:55:10 2017 -0500 +++ b/tools/seq_filter_by_mapping/seq_filter_by_mapping.py Thu Feb 09 11:27:06 2017 -0500 @@ -18,10 +18,12 @@ Use -v or --version to get the version, -h or --help for help. """ + import os -import sys import re import subprocess +import sys + from optparse import OptionParser # Parse Command Line @@ -114,6 +116,8 @@ else: # Nothing to do return name + + assert clean_name("foo/1") == "foo" assert clean_name("foo/2") == "foo" assert clean_name("bar.f") == "bar"