# HG changeset patch
# User peterjc
# Date 1496759113 14400
# Node ID 1ccb3fea40ba6d2cc9fec2d7f58f8e3178493ed6
# Parent  37de286fc844a289674b876a5f4b99ac4132d848
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_filter_by_mapping commit 79bbb921cb5aa953f0323accd6c8c293c6e486cf-dirty

diff -r 37de286fc844 -r 1ccb3fea40ba tools/seq_filter_by_mapping/seq_filter_by_mapping.py
--- a/tools/seq_filter_by_mapping/seq_filter_by_mapping.py	Wed May 17 14:03:07 2017 -0400
+++ b/tools/seq_filter_by_mapping/seq_filter_by_mapping.py	Tue Jun 06 10:25:13 2017 -0400
@@ -156,6 +156,7 @@
         # Presumably a BAM file then...
         # Call samtools view, don't need header so no -h added:
         child = subprocess.Popen(["samtools", "view", filename],
+                                 universal_newlines=True,
                                  stdin=None,
                                  stdout=subprocess.PIPE,
                                  stderr=subprocess.PIPE)