# HG changeset patch # User peterjc # Date 1379433321 14400 # Node ID b1b4ad43caf191812117a4d144b89e1518b21787 # Parent d08224a6b131b3d0435d47b41163bb8676e8291c Uploaded v0.0.6f, development moved to GitHub diff -r d08224a6b131 -r b1b4ad43caf1 tools/filters/repository_dependencies.xml --- a/tools/filters/repository_dependencies.xml Fri Sep 13 06:12:47 2013 -0400 +++ b/tools/filters/repository_dependencies.xml Tue Sep 17 11:55:21 2013 -0400 @@ -2,5 +2,5 @@ - + diff -r d08224a6b131 -r b1b4ad43caf1 tools/filters/seq_filter_by_id.rst --- a/tools/filters/seq_filter_by_id.rst Fri Sep 13 06:12:47 2013 -0400 +++ b/tools/filters/seq_filter_by_id.rst Tue Sep 17 11:55:21 2013 -0400 @@ -59,17 +59,18 @@ ======= ====================================================================== Version Changes ------- ---------------------------------------------------------------------- -v0.0.1 - Initial version, combining three separate scripts for each file format. -v0.0.4 - Record script version when run from Galaxy. - - Faster FASTA code which preserves the original line wrapping. - - Basic unit test included. -v0.0.5 - Check for errors using Python script's return code. - - Cope with malformed FASTA entries without an identifier. -v0.0.6 - Link to Tool Shed added to help text and this documentation. - - Automated installation of the Biopython dependency. - - Use reStructuredText for this README file. - - Adopt standard MIT License. - - Updated citation information (Cock et al. 2013). +v0.0.1 - Initial version, combining three separate scripts for each file format. +v0.0.4 - Record script version when run from Galaxy. + - Faster FASTA code which preserves the original line wrapping. + - Basic unit test included. +v0.0.5 - Check for errors using Python script's return code. + - Cope with malformed FASTA entries without an identifier. +v0.0.6 - Link to Tool Shed added to help text and this documentation. + - Automated installation of the Biopython dependency. + - Use reStructuredText for this README file. + - Adopt standard MIT License. + - Updated citation information (Cock et al. 2013). + - Development moved to GitHub, https://github.com/peterjc/pico_galaxy ======= ====================================================================== @@ -77,11 +78,12 @@ Developers ========== -This script and related tools are being developed on the following hg branch: +This script and related tools were initially developed on the following hg branches: +http://bitbucket.org/peterjc/galaxy-central/src/fasta_filter http://bitbucket.org/peterjc/galaxy-central/src/tools -This incorporates the previously used hg branch: -http://bitbucket.org/peterjc/galaxy-central/src/fasta_filter +Development has now moved to a dedicated GitHub repository: +https://github.com/peterjc/pico_galaxy/tree/master/tools For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use the following command from the Galaxy root folder::