# HG changeset patch
# User peterjc
# Date 1495189499 14400
# Node ID a251dfee431f29a53d34d8b2849f7ab90123a12f
# Parent  f96c2911189e4b242b51d6e83453ccd8bf03cc6f
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_filter_by_id commit 7138d537aaec46596985acf123348fe6f99cd6f1-dirty

diff -r f96c2911189e -r a251dfee431f tools/seq_filter_by_id/seq_filter_by_id.py
--- a/tools/seq_filter_by_id/seq_filter_by_id.py	Wed May 17 14:02:16 2017 -0400
+++ b/tools/seq_filter_by_id/seq_filter_by_id.py	Fri May 19 06:24:59 2017 -0400
@@ -225,7 +225,8 @@
                 name = clean_name(line.rstrip("\n").split("\t")[col])
                 if name:
                     file_ids.add(name)
-    print("Using %i IDs from column %s in tabular file" % (len(file_ids), ", ".join(str(col + 1) for col in columns)))
+    print("Using %i IDs from column %s in tabular file" %
+          (len(file_ids), ", ".join(str(col + 1) for col in columns)))
     if ids is None:
         ids = file_ids
     if logic == "UNION":
@@ -378,13 +379,15 @@
         out_handle = open(pos_file, "wb")
         writer = SffWriter(out_handle, xml=manifest)
         in_handle.seek(0)  # start again after getting manifest
-        pos_count = writer.write_file(rec for rec in SffIterator(in_handle) if clean_name(rec.id) in wanted)
+        pos_count = writer.write_file(rec for rec in SffIterator(in_handle)
+                                      if clean_name(rec.id) in wanted)
         out_handle.close()
     if neg_file is not None:
         out_handle = open(neg_file, "wb")
         writer = SffWriter(out_handle, xml=manifest)
         in_handle.seek(0)  # start again
-        neg_count = writer.write_file(rec for rec in SffIterator(in_handle) if clean_name(rec.id) not in wanted)
+        neg_count = writer.write_file(rec for rec in SffIterator(in_handle)
+                                      if clean_name(rec.id) not in wanted)
         out_handle.close()
     # And we're done
     in_handle.close()