# HG changeset patch
# User peterjc
# Date 1375103929 14400
# Node ID 00153c4efec3da70919f0f1ce00852c3eba1af7b
# Parent  3b990ab4ae0495f1aa62cc13698776bf3c52ca9e
Uploaded v0.0.6b which includes the Biopython dependency

diff -r 3b990ab4ae04 -r 00153c4efec3 tools/filters/repository_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/filters/repository_dependencies.xml	Mon Jul 29 09:18:49 2013 -0400
@@ -0,0 +1,6 @@
+<?xml version="1.0"?>
+<repositories description="This requires Biopython as a dependency.">
+<!-- Leave out the tool shed and revision to get the current
+     tool shed and latest revision at the time of upload -->
+<repository changeset_revision="627c7b41b970" name="package_biopython_1_61" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+</repositories>
diff -r 3b990ab4ae04 -r 00153c4efec3 tools/filters/seq_filter_by_id.py
--- a/tools/filters/seq_filter_by_id.py	Wed Jul 24 11:53:21 2013 -0400
+++ b/tools/filters/seq_filter_by_id.py	Mon Jul 29 09:18:49 2013 -0400
@@ -27,7 +27,7 @@
 
 This script is copyright 2010-2013 by Peter Cock, The James Hutton Institute
 (formerly the Scottish Crop Research Institute, SCRI), UK. All rights reserved.
-See accompanying text file for licence details (MIT/BSD style).
+See accompanying text file for licence details (MIT license).
 
 This is version 0.1.0 of the script, use -v or --version to get the version.
 """
diff -r 3b990ab4ae04 -r 00153c4efec3 tools/filters/seq_filter_by_id.rst
--- a/tools/filters/seq_filter_by_id.rst	Wed Jul 24 11:53:21 2013 -0400
+++ b/tools/filters/seq_filter_by_id.rst	Mon Jul 29 09:18:49 2013 -0400
@@ -85,14 +85,15 @@
 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use
 the following command from the Galaxy root folder::
 
-    $ tar -czf seq_filter_by_id.tar.gz tools/filters/seq_filter_by_id.* test-data/k12_ten_proteins.fasta test-data/k12_hypothetical.fasta test-data/k12_hypothetical.tabular
+    $ tar -czf seq_filter_by_id.tar.gz tools/filters/seq_filter_by_id.* tools/filters/repository_dependencies.xml test-data/k12_ten_proteins.fasta test-data/k12_hypothetical.fasta test-data/k12_hypothetical.tabular
 
 Check this worked::
 
     $ tar -tzf seq_filter_by_id.tar.gz
-    filter/seq_filter_by_id.py
-    filter/seq_filter_by_id.rst
-    filter/seq_filter_by_id.xml
+    tools/filters/seq_filter_by_id.py
+    tools/filters/seq_filter_by_id.rst
+    tools/filters/seq_filter_by_id.xml
+    tools/filters/repository_dependencies.xml
     test-data/k12_ten_proteins.fasta
     test-data/k12_hypothetical.fasta
     test-data/k12_hypothetical.tabular