Mercurial > repos > peterjc > secreted_protein_workflow
changeset 6:36b2c2b5051e draft
Uploaded v0.0.2 with updated tool versions, should fix header_lines warning from Filter1 tool.
| author | peterjc |
|---|---|
| date | Wed, 21 Aug 2013 11:10:14 -0400 |
| parents | 5f3cc8229771 |
| children | f32581ab2c35 |
| files | ._secreted_protein_workflow.ga README.rst secreted_protein_workflow.ga |
| diffstat | 3 files changed, 23 insertions(+), 10 deletions(-) [+] |
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--- a/README.rst Tue Aug 20 07:37:19 2013 -0400 +++ b/README.rst Wed Aug 21 11:10:14 2013 -0400 @@ -92,6 +92,19 @@ installation (SignalP v3.0 and TMHMM v2.0). +History +======= + +======= ====================================================================== +Version Changes +------- ---------------------------------------------------------------------- +v0.0.1 - Initial release to Tool Shed (May, 2013) + - Expanded README file to include example data +v0.0.2 - Updated versions of the tools used, inclulding core Galaxy Filter + tool to avoid warning about new ``header_lines`` parameter. +======= ====================================================================== + + Developers ==========
--- a/secreted_protein_workflow.ga Tue Aug 20 07:37:19 2013 -0400 +++ b/secreted_protein_workflow.ga Wed Aug 21 11:10:14 2013 -0400 @@ -62,8 +62,8 @@ }, "tool_errors": null, "tool_id": "signalp3", - "tool_state": "{\"organism\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"fasta_file\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"truncate\": \"\\\"60\\\"\", \"__page__\": 0}", - "tool_version": "0.0.8", + "tool_state": "{\"__page__\": 0, \"truncate\": \"\\\"60\\\"\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"fasta_file\": \"null\", \"organism\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null}", + "tool_version": "0.0.12", "type": "tool", "user_outputs": [] }, @@ -104,7 +104,7 @@ }, "tool_errors": null, "tool_id": "Filter1", - "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c14=='Y' or c15=='S'\\\"\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"input\": \"null\"}", + "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"cond\": \"\\\"c14=='Y' or c15=='S'\\\"\", \"input\": \"null\", \"header_lines\": \"\\\"0\\\"\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}", "tool_version": "1.1.0", "type": "tool", "user_outputs": [] @@ -152,8 +152,8 @@ }, "tool_errors": null, "tool_id": "seq_filter_by_id", - "tool_state": "{\"__page__\": 0, \"output_choice_cond\": \"{\\\"output_choice\\\": \\\"pos\\\", \\\"__current_case__\\\": 1}\", \"input_file\": \"null\", \"input_tabular\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"columns\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": [\\\"1\\\"]}\"}", - "tool_version": "0.0.1", + "tool_state": "{\"__page__\": 0, \"output_choice_cond\": \"{\\\"output_choice\\\": \\\"pos\\\", \\\"__current_case__\\\": 1}\", \"input_file\": \"null\", \"__rerun_remap_job_id__\": null, \"input_tabular\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"columns\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": [\\\"1\\\"]}\"}", + "tool_version": "0.0.5", "type": "tool", "user_outputs": [] }, @@ -187,8 +187,8 @@ }, "tool_errors": null, "tool_id": "tmhmm2", - "tool_state": "{\"__page__\": 0, \"fasta_file\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}", - "tool_version": "0.0.7", + "tool_state": "{\"__page__\": 0, \"fasta_file\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"__rerun_remap_job_id__\": null}", + "tool_version": "0.0.11", "type": "tool", "user_outputs": [] }, @@ -229,7 +229,7 @@ }, "tool_errors": null, "tool_id": "Filter1", - "tool_state": "{\"__page__\": 0, \"cond\": \"\\\"c5== 0\\\"\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"input\": \"null\"}", + "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"cond\": \"\\\"c5== 0\\\"\", \"input\": \"null\", \"header_lines\": \"\\\"0\\\"\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}", "tool_version": "1.1.0", "type": "tool", "user_outputs": [] @@ -279,8 +279,8 @@ }, "tool_errors": null, "tool_id": "seq_filter_by_id", - "tool_state": "{\"__page__\": 0, \"output_choice_cond\": \"{\\\"output_choice\\\": \\\"pos\\\", \\\"__current_case__\\\": 1}\", \"input_file\": \"null\", \"input_tabular\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"columns\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": [\\\"1\\\"]}\"}", - "tool_version": "0.0.1", + "tool_state": "{\"__page__\": 0, \"output_choice_cond\": \"{\\\"output_choice\\\": \\\"pos\\\", \\\"__current_case__\\\": 1}\", \"input_file\": \"null\", \"__rerun_remap_job_id__\": null, \"input_tabular\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"columns\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": [\\\"1\\\"]}\"}", + "tool_version": "0.0.5", "type": "tool", "user_outputs": [] }