# HG changeset patch
# User peterjc
# Date 1541780204 18000
# Node ID d3468f9cab7121aa1f1bc31af824f6f5835682fa
# Parent  cb25a70933ea67877815fd15c2c654bb430eff5a
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/workflows/secreted_protein_workflow commit 3ab3d1a9650dec0533344d710ceb027e482d2b10-dirty

diff -r cb25a70933ea -r d3468f9cab71 README.rst
--- a/README.rst	Fri Sep 15 10:33:12 2017 -0400
+++ b/README.rst	Fri Nov 09 11:16:44 2018 -0500
@@ -56,16 +56,16 @@
 Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz and Leighton Pritchard (2013).
 Galaxy tools and workflows for sequence analysis with applications
 in molecular plant pathology. PeerJ 1:e167
-http://dx.doi.org/10.7717/peerj.167
+https://doi.org/10.7717/peerj.167
 
 Bendtsen, J.D., Nielsen, H., von Heijne, G., Brunak, S. (2004)
 Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340: 783–95.
-http://dx.doi.org/10.1016/j.jmb.2004.05.028
+https://doi.org/10.1016/j.jmb.2004.05.028
 
 Krogh, A., Larsson, B., von Heijne, G., Sonnhammer, E. (2001)
 Predicting transmembrane protein topology with a hidden Markov model:
 application to complete genomes. J Mol Biol 305: 567- 580.
-http://dx.doi.org/10.1006/jmbi.2000.4315
+https://doi.org/10.1006/jmbi.2000.4315
 
 
 Additional References
@@ -74,13 +74,13 @@
 Kikuchi, T., Cotton, J.A., Dalzell, J.J., Hasegawa. K., et al. (2011)
 Genomic insights into the origin of parasitism in the emerging plant
 pathogen *Bursaphelenchus xylophilus*. PLoS Pathog 7: e1002219.
-http://dx.doi.org/10.1371/journal.ppat.1002219
+https://doi.org/10.1371/journal.ppat.1002219
 
 Jones, J.T., Kumar, A., Pylypenko, L.A., Thirugnanasambandam, A., et al. (2009)
 Identification and functional characterization of effectors in expressed
 sequence tags from various life cycle stages of the potato cyst nematode
 *Globodera pallida*. Mol Plant Pathol 10: 815–28.
-http://dx.doi.org/10.1111/j.1364-3703.2009.00585.x
+https://doi.org/10.1111/j.1364-3703.2009.00585.x
 
 
 Dependencies
diff -r cb25a70933ea -r d3468f9cab71 repository_dependencies.xml
--- a/repository_dependencies.xml	Fri Sep 15 10:33:12 2017 -0400
+++ b/repository_dependencies.xml	Fri Nov 09 11:16:44 2018 -0500
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <repositories description="This requires my SignalP and TMHMM wrapers, and my FASTA filtering tool.">
     <!-- Revision 15:6abd809cefdd on the main tool shed is v0.2.4, the current latest - but older should be OK -->
-    <repository changeset_revision="3cb02adf4326" name="tmhmm_and_signalp" owner="peterjc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="3c9bbbc6cbbe" name="tmhmm_and_signalp" owner="peterjc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     <!-- Revision 2:abdd608c869b on the main tool shed is v0.0.5, the current latest - but older should be OK -->
-    <repository changeset_revision="735dfff31c1d" name="seq_filter_by_id" owner="peterjc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="bc608928a007" name="seq_filter_by_id" owner="peterjc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
 </repositories>