Mercurial > repos > peterjc > secreted_protein_workflow
comparison README.rst @ 13:d3468f9cab71 draft default tip
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/workflows/secreted_protein_workflow commit 3ab3d1a9650dec0533344d710ceb027e482d2b10-dirty
author | peterjc |
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date | Fri, 09 Nov 2018 11:16:44 -0500 |
parents | cb25a70933ea |
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54 http://www.springer.com/life+sciences/plant+sciences/book/978-1-62703-985-7 | 54 http://www.springer.com/life+sciences/plant+sciences/book/978-1-62703-985-7 |
55 | 55 |
56 Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz and Leighton Pritchard (2013). | 56 Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz and Leighton Pritchard (2013). |
57 Galaxy tools and workflows for sequence analysis with applications | 57 Galaxy tools and workflows for sequence analysis with applications |
58 in molecular plant pathology. PeerJ 1:e167 | 58 in molecular plant pathology. PeerJ 1:e167 |
59 http://dx.doi.org/10.7717/peerj.167 | 59 https://doi.org/10.7717/peerj.167 |
60 | 60 |
61 Bendtsen, J.D., Nielsen, H., von Heijne, G., Brunak, S. (2004) | 61 Bendtsen, J.D., Nielsen, H., von Heijne, G., Brunak, S. (2004) |
62 Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340: 783–95. | 62 Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340: 783–95. |
63 http://dx.doi.org/10.1016/j.jmb.2004.05.028 | 63 https://doi.org/10.1016/j.jmb.2004.05.028 |
64 | 64 |
65 Krogh, A., Larsson, B., von Heijne, G., Sonnhammer, E. (2001) | 65 Krogh, A., Larsson, B., von Heijne, G., Sonnhammer, E. (2001) |
66 Predicting transmembrane protein topology with a hidden Markov model: | 66 Predicting transmembrane protein topology with a hidden Markov model: |
67 application to complete genomes. J Mol Biol 305: 567- 580. | 67 application to complete genomes. J Mol Biol 305: 567- 580. |
68 http://dx.doi.org/10.1006/jmbi.2000.4315 | 68 https://doi.org/10.1006/jmbi.2000.4315 |
69 | 69 |
70 | 70 |
71 Additional References | 71 Additional References |
72 ===================== | 72 ===================== |
73 | 73 |
74 Kikuchi, T., Cotton, J.A., Dalzell, J.J., Hasegawa. K., et al. (2011) | 74 Kikuchi, T., Cotton, J.A., Dalzell, J.J., Hasegawa. K., et al. (2011) |
75 Genomic insights into the origin of parasitism in the emerging plant | 75 Genomic insights into the origin of parasitism in the emerging plant |
76 pathogen *Bursaphelenchus xylophilus*. PLoS Pathog 7: e1002219. | 76 pathogen *Bursaphelenchus xylophilus*. PLoS Pathog 7: e1002219. |
77 http://dx.doi.org/10.1371/journal.ppat.1002219 | 77 https://doi.org/10.1371/journal.ppat.1002219 |
78 | 78 |
79 Jones, J.T., Kumar, A., Pylypenko, L.A., Thirugnanasambandam, A., et al. (2009) | 79 Jones, J.T., Kumar, A., Pylypenko, L.A., Thirugnanasambandam, A., et al. (2009) |
80 Identification and functional characterization of effectors in expressed | 80 Identification and functional characterization of effectors in expressed |
81 sequence tags from various life cycle stages of the potato cyst nematode | 81 sequence tags from various life cycle stages of the potato cyst nematode |
82 *Globodera pallida*. Mol Plant Pathol 10: 815–28. | 82 *Globodera pallida*. Mol Plant Pathol 10: 815–28. |
83 http://dx.doi.org/10.1111/j.1364-3703.2009.00585.x | 83 https://doi.org/10.1111/j.1364-3703.2009.00585.x |
84 | 84 |
85 | 85 |
86 Dependencies | 86 Dependencies |
87 ============ | 87 ============ |
88 | 88 |