# HG changeset patch # User peterjc # Date 1417193261 18000 # Node ID 8e1e3a1ecad7612affd41a3aade41b1085826b66 # Parent 8c1a4a771903c8a688dee3faefc0aa7f4a2b2ed7 Uploaded v0.0.2, embeds citation diff -r 8c1a4a771903 -r 8e1e3a1ecad7 tools/samtools_depad/README.rst --- a/tools/samtools_depad/README.rst Tue Apr 15 12:00:11 2014 -0400 +++ b/tools/samtools_depad/README.rst Fri Nov 28 11:47:41 2014 -0500 @@ -21,7 +21,7 @@ Manual Installation =================== -This expects samtools to be on the $PATH, and was tested using v0.1.19. +This expects samtools to be on the ``$PATH``, and was tested using v0.1.19. To install the wrapper copy or move the following files under the Galaxy tools folder, e.g. in a ``tools/samtools_depad`` folder: @@ -35,10 +35,10 @@ -If you wish to run the unit tests, also add this to ``tools_conf.xml.sample`` -and move/copy the ``test-data`` files under Galaxy's ``test-data`` folder. Then:: +If you wish to run the unit tests, also move/copy the ``test-data/`` files +under Galaxy's ``test-data/`` folder. Then:: - $ ./run_functional_tests.sh -id samtools_depad + $ ./run_tests.sh -id samtools_depad That's it. @@ -49,7 +49,8 @@ ======= ====================================================================== Version Changes ------- ---------------------------------------------------------------------- -v0.0.1 - Initial public release +v0.0.1 - Initial public release. +v0.0.2 - Embed samtools citation in the tool XML. ======= ====================================================================== diff -r 8c1a4a771903 -r 8e1e3a1ecad7 tools/samtools_depad/samtools_depad.xml --- a/tools/samtools_depad/samtools_depad.xml Tue Apr 15 12:00:11 2014 -0400 +++ b/tools/samtools_depad/samtools_depad.xml Fri Nov 28 11:47:41 2014 -0500 @@ -1,4 +1,4 @@ - + samtools depad samtools @@ -56,4 +56,7 @@ This wrapper is available to install into other Galaxy Instances via the Galaxy Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/samtools_depad + + 10.1093/bioinformatics/btp352 + diff -r 8c1a4a771903 -r 8e1e3a1ecad7 tools/samtools_depad/tool_dependencies.xml --- a/tools/samtools_depad/tool_dependencies.xml Tue Apr 15 12:00:11 2014 -0400 +++ b/tools/samtools_depad/tool_dependencies.xml Fri Nov 28 11:47:41 2014 -0500 @@ -1,6 +1,6 @@ - +