# HG changeset patch
# User peterjc
# Date 1417193261 18000
# Node ID 8e1e3a1ecad7612affd41a3aade41b1085826b66
# Parent 8c1a4a771903c8a688dee3faefc0aa7f4a2b2ed7
Uploaded v0.0.2, embeds citation
diff -r 8c1a4a771903 -r 8e1e3a1ecad7 tools/samtools_depad/README.rst
--- a/tools/samtools_depad/README.rst Tue Apr 15 12:00:11 2014 -0400
+++ b/tools/samtools_depad/README.rst Fri Nov 28 11:47:41 2014 -0500
@@ -21,7 +21,7 @@
Manual Installation
===================
-This expects samtools to be on the $PATH, and was tested using v0.1.19.
+This expects samtools to be on the ``$PATH``, and was tested using v0.1.19.
To install the wrapper copy or move the following files under the Galaxy tools
folder, e.g. in a ``tools/samtools_depad`` folder:
@@ -35,10 +35,10 @@
-If you wish to run the unit tests, also add this to ``tools_conf.xml.sample``
-and move/copy the ``test-data`` files under Galaxy's ``test-data`` folder. Then::
+If you wish to run the unit tests, also move/copy the ``test-data/`` files
+under Galaxy's ``test-data/`` folder. Then::
- $ ./run_functional_tests.sh -id samtools_depad
+ $ ./run_tests.sh -id samtools_depad
That's it.
@@ -49,7 +49,8 @@
======= ======================================================================
Version Changes
------- ----------------------------------------------------------------------
-v0.0.1 - Initial public release
+v0.0.1 - Initial public release.
+v0.0.2 - Embed samtools citation in the tool XML.
======= ======================================================================
diff -r 8c1a4a771903 -r 8e1e3a1ecad7 tools/samtools_depad/samtools_depad.xml
--- a/tools/samtools_depad/samtools_depad.xml Tue Apr 15 12:00:11 2014 -0400
+++ b/tools/samtools_depad/samtools_depad.xml Fri Nov 28 11:47:41 2014 -0500
@@ -1,4 +1,4 @@
-
+
samtools depad
samtools
@@ -56,4 +56,7 @@
This wrapper is available to install into other Galaxy Instances via the Galaxy
Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/samtools_depad
+
+ 10.1093/bioinformatics/btp352
+
diff -r 8c1a4a771903 -r 8e1e3a1ecad7 tools/samtools_depad/tool_dependencies.xml
--- a/tools/samtools_depad/tool_dependencies.xml Tue Apr 15 12:00:11 2014 -0400
+++ b/tools/samtools_depad/tool_dependencies.xml Fri Nov 28 11:47:41 2014 -0500
@@ -1,6 +1,6 @@
-
+