Mercurial > repos > peterjc > samtools_bam2fq

annotate test-data/sam_spec_padded.sam @ 2:27135d7637b6 draft

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Uploaded v0.0.1b, now includes -n and -O options.
author peterjc
date Tue, 04 Nov 2014 06:07:53 -0500
parents 1b9ed562835c
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
1b9ed562835c Uploaded v0.0.1, handles default behaviour only (SAM/BAM to FASTQ, no options).
peterjc
parents:
diff changeset
1 @HD VN:1.5 SO:coordinate
1b9ed562835c Uploaded v0.0.1, handles default behaviour only (SAM/BAM to FASTQ, no options).
peterjc
parents:
diff changeset
2 @SQ SN:ref LN:47
1b9ed562835c Uploaded v0.0.1, handles default behaviour only (SAM/BAM to FASTQ, no options).
peterjc
parents:
diff changeset
3 ref 516 ref 1 0 14M2D31M * 0 0 AGCATGTTAGATAAGATAGCTGTGCTAGTAGGCAGTCAGCGCCAT *
1b9ed562835c Uploaded v0.0.1, handles default behaviour only (SAM/BAM to FASTQ, no options).
peterjc
parents:
diff changeset
4 r001 99 ref 7 30 14M1D3M = 39 41 TTAGATAAAGGATACTG *
1b9ed562835c Uploaded v0.0.1, handles default behaviour only (SAM/BAM to FASTQ, no options).
peterjc
parents:
diff changeset
5 * 768 ref 8 30 1M * 0 0 * * CT:Z:.;Warning;Note=Ref wrong?
1b9ed562835c Uploaded v0.0.1, handles default behaviour only (SAM/BAM to FASTQ, no options).
peterjc
parents:
diff changeset
6 r002 0 ref 9 30 3S6M1D5M * 0 0 AAAAGATAAGGATA * PT:Z:1;4;+;homopolymer
1b9ed562835c Uploaded v0.0.1, handles default behaviour only (SAM/BAM to FASTQ, no options).
peterjc
parents:
diff changeset
7 r003 0 ref 9 30 5H6M * 0 0 AGCTAA * NM:i:1
1b9ed562835c Uploaded v0.0.1, handles default behaviour only (SAM/BAM to FASTQ, no options).
peterjc
parents:
diff changeset
8 r004 0 ref 18 30 6M14D5M * 0 0 ATAGCTTCAGC *
1b9ed562835c Uploaded v0.0.1, handles default behaviour only (SAM/BAM to FASTQ, no options).
peterjc
parents:
diff changeset
9 r003 2064 ref 31 30 6H5M * 0 0 TAGGC * NM:i:0
1b9ed562835c Uploaded v0.0.1, handles default behaviour only (SAM/BAM to FASTQ, no options).
peterjc
parents:
diff changeset
10 r001 147 ref 39 30 9M = 7 -41 CAGCGGCAT * NM:i:1