# HG changeset patch
# User peterjc
# Date 1541779213 18000
# Node ID 9cedad578085efdad7a099795e70e28657172e22
# Parent  9e191e8df0412a04f03975e7c7d55ab2f08fd135
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/sample_seqs commit 3ab3d1a9650dec0533344d710ceb027e482d2b10-dirty

diff -r 9e191e8df041 -r 9cedad578085 tools/sample_seqs/sample_seqs.py
--- a/tools/sample_seqs/sample_seqs.py	Fri Sep 15 10:27:28 2017 -0400
+++ b/tools/sample_seqs/sample_seqs.py	Fri Nov 09 11:00:13 2018 -0500
@@ -7,7 +7,7 @@
 
 Cock et al 2009. Biopython: freely available Python tools for computational
 molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3.
-http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878.
+https://doi.org/10.1093/bioinformatics/btp163 pmid:19304878.
 
 This script is copyright 2014-2015 by Peter Cock, The James Hutton Institute
 (formerly the Scottish Crop Research Institute, SCRI), UK. All rights reserved.
@@ -208,7 +208,7 @@
             sys.stderr.write("Sampling %i sequences\n" % N)
     if N == total:
         def sampler(iterator):
-            """Dummy filter to filter nothing, taking everything."""
+            """No-operation dummy filter, taking everything."""
             global N
             taken = 0
             for record in iterator:
@@ -257,7 +257,7 @@
 
 
 def raw_fasta_iterator(handle):
-    """Yields raw FASTA records as multi-line strings."""
+    """Yield raw FASTA records as multi-line strings."""
     while True:
         line = handle.readline()
         if line == "":
diff -r 9e191e8df041 -r 9cedad578085 tools/sample_seqs/sample_seqs.xml
--- a/tools/sample_seqs/sample_seqs.xml	Fri Sep 15 10:27:28 2017 -0400
+++ b/tools/sample_seqs/sample_seqs.xml	Fri Nov 09 11:00:13 2018 -0500
@@ -235,7 +235,7 @@
 
 Cock et al (2009). Biopython: freely available Python tools for computational
 molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3.
-http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878.
+https://doi.org/10.1093/bioinformatics/btp163 pmid:19304878.
 
 This tool is available to install into other Galaxy Instances via the Galaxy
 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/sample_seqs