Mercurial > repos > peterjc > sample_seqs

annotate test-data/get_orf_input.Suis_ORF.prot.sample_C10.fasta @ 5:557afc1343bb draft

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Uploaded v0.2.0a, updated to depend on Biopython 1.65
author peterjc
date Fri, 06 Mar 2015 04:56:59 -0500
parents 09a4ee5d12fd
children
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4
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
parents:
diff changeset
1 >Streptococcus_suis|ORF1 length 457 aa, 1374 bp, from 1..1374 of Streptococcus_suis
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
parents:
diff changeset
2 MNQEQLFWQRFIELAKVNFKPSIYDFYVADAKLLGINQQVANIFLNRPFKKDFWEKNFEE
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
3 LMIAASFESYGEPLTIQYQFTEDEQEIRNTTNTRSSIVHQVQTLEPATPQETFKPVHSDI
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
4 KSQYTFANFVQGDNNHWAKAAALAVSDNLGELYNPLFIFGGPGLGKTHILNAIGNKVLAD
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
parents:
diff changeset
5 NPQARIKYVSSETFINEFLEHLRLNDMESFKKTYRNLDLLLIDDIQSLRNKATTQEEFFH
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
6 TFNALHEKNKQIVLTSDRNPDHLDNLEERLVTRFKWGLTSEITPPDFETRIAILRNKCEN
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
7 LPYNFTNETLSYLAGQFDSNVRDLEGALKDIHLIATMRQLSEISVEVAAEAIRSRKQTNP
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
8 QNMVIPIEKIQTEVGNFYGVSLKELKGSKRVQHIVHARQVAMFLAREMTDNSLPKIGKEF
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
9 GNRDHTTVMHAYNKIKTLLLDDENLEIEITSIKNKLR
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
10 >Streptococcus_suis|ORF292 length 216 aa, 651 bp, from 185183..185833 of Streptococcus_suis
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
parents:
diff changeset
11 AVGKDHLTLDPISVEQIIAVMPVLIVVTAGAVQGSTLGSQSFFVGCFIAEEVTCLQTLGV
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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12 GQGGQAVQIFAWIATRAGHQPVFTVVVIPRGNPCFCDDDFQSVHASCCQGIGHGTEIRQS
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
13 RRRYLTIGPIGLDLKRASVVCVGLGATVQPVNHRFIALHLLVVARCHVARRAQRANTRHM
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
14 EAGKAASEEVVIEGVRSNVPQFFSSRADRQVPLVQV
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
parents:
diff changeset
15 >Streptococcus_suis|ORF583 length 391 aa, 1176 bp, from 397805..398980 of Streptococcus_suis
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
16 RKKMKKQFELIATAAAGLEAVVGREIRNLGYECQVENGRVRFQGDVKSIIETNIWLRSAD
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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17 RIKIIVGQFPAKTFEELFQGVFNLDWENYLPLGCKFPISKAKCVKSKLHNEPSVQAISKK
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
18 AVVKKLQKHFSRPEGVPLQEMGAEFKIEVSILKDVATVMIDTTGSSLFKRGYRVEKGGAP
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
19 IKENMAAAILQLSNWYPDKPLIDPTCGSGTFCIEAAMLAKNIAPGLKRSFAFEEWPWVED
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
20 QLVVALRKEAQASIKTDLVLDITGSDIDARMIEIAKKNAFAAGVEQDIVFKQMRVQDLRT
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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21 DKINGVIISNPPYGERLLDDEAIVTLYREMGETFEPLKTWSKFILTSDELFETRFGQQAD
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
22 KKRKLYNGTLKVDLYQFFGQRVKRQVQEVQG
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
23 >Streptococcus_suis|ORF874 length 113 aa, 342 bp, from complement(605625..605966) of Streptococcus_suis
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
24 VSNIVTAITTVNQSQAFQLAKVFFDSQVVRQHLSWVPCICQTIPYWHTGEFCQFFHHFLT
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
25 ETTEFNTVEHTSQNFSSIFCRFFLTKLDVICTKIFWMGTKVNRCYCEGSTSTC
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
26 >Streptococcus_suis|ORF1165 length 105 aa, 318 bp, from 811613..811930 of Streptococcus_suis
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
27 AYNESVKRKECHLMKQVNMSKIINYLTILGLLILLSAFFLDNWIRDWFFPSSWGNVATML
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
28 ILPLLGALILILSIYYKKLWTGLISIFLIISFPLIFGIGYFIFGP
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
29 >Streptococcus_suis|ORF1456 length 116 aa, 351 bp, from complement(1027944..1028294) of Streptococcus_suis
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
30 YGNACNSRPPTCDKSYSCWETLIYMGLNLVQFHFLISWYNGNMVISILQFFSHILFIYLA
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
31 HHLLVTTVDWSRWLKVTGDNQRKINLLILFLAIALGYLVSTFFLELLMMGRSFANM
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
32 >Streptococcus_suis|ORF1747 length 335 aa, 1008 bp, from complement(1225218..1226225) of Streptococcus_suis
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
33 RMLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARG
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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34 LASKKTTTVGVVIPNIANAYFATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFS
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
35 KQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLPSVNIDYAAASVDAVNLLAK
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
36 NNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYALAERILN
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
37 AGATAAYVAEDEIAAGLLNGVSDMGIKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDI
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
38 GAIAMRMLTKIMHKEELENREVVLNHGIKVRKSTK
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
parents:
diff changeset
39 >Streptococcus_suis|ORF2038 length 112 aa, 339 bp, from 1422849..1423187 of Streptococcus_suis
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
parents:
diff changeset
40 SSKMPAVLQRTSTDWHQEKTGDKSPVRSSCRKWKSPAKSGLLARSIPKTRQPFSKKIPAC
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
41 ARPMPLETPVMRAVLVMDFYPVGRKDIARGRAPHGEAFTLAGHVDEEIGRRL
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
42 >Streptococcus_suis|ORF2329 length 160 aa, 483 bp, from 1612284..1612766 of Streptococcus_suis
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
parents:
diff changeset
43 LIETNWFHHLTGQEGLDVLFFHNLGFRITDQLYLEVRKFHLLQGLSQLLRRWSQESRVKG
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
parents:
diff changeset
44 ARYIERNHPLDTCFLQQFNRLIHCSHLASDDDLGWCVVVGWGNNPRGNSRTDFFNQVDIC
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
45 VENSNHLTSPCWRSQFHIFTTLSNQGNRIFKGQSSRCHQS
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
parents:
diff changeset
46 >Streptococcus_suis|ORF2620 length 192 aa, 579 bp, from complement(1803558..1804136) of Streptococcus_suis
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
parents:
diff changeset
47 RLKIPCFQRKEVTMYDSFDKGWFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEIPTQ
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
48 TVQVEKNGEVKEVEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLE
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
49 EEIRQILVSMGQTVQEFDIDVKVGDTVRIIDGAFTDYTGKITEIDNNKVKMVISMFGNDT
09a4ee5d12fd Uploaded v0.2.0, adding desired count method
peterjc
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diff changeset
50 IAEVNLSQIAEL