# HG changeset patch
# User peterjc
# Date 1495034383 14400
# Node ID 90cc8b7d2ee01e8be844ef9375ca5a46361300ba
# Parent  a3187d5724c466b09c0bb49a94149ca88b8e7a58
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/predictnls commit 37d5b47ec23e2cbaa453cc660bb1fcbb10dd34ee-dirty

diff -r a3187d5724c4 -r 90cc8b7d2ee0 tools/predictnls/README.rst
--- a/tools/predictnls/README.rst	Wed May 10 12:46:01 2017 -0400
+++ b/tools/predictnls/README.rst	Wed May 17 11:19:43 2017 -0400
@@ -66,8 +66,10 @@
 v0.0.7  - Tool definition now embeds citation information.
 v0.0.8  - Reorder XML elements (internal change only).
         - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
-        - Use ``<command detect_errors="aggressive">`` (internal change only).
+v0.0.9  - Use ``<command detect_errors="aggressive">`` (internal change only).
         - Single quote command line arguments (internal change only).
+        - Python 3 compatible print function.
+        - Record version of the Python script.
 ======= ======================================================================
 
 
diff -r a3187d5724c4 -r 90cc8b7d2ee0 tools/predictnls/predictnls.py
--- a/tools/predictnls/predictnls.py	Wed May 10 12:46:01 2017 -0400
+++ b/tools/predictnls/predictnls.py	Wed May 17 11:19:43 2017 -0400
@@ -49,10 +49,16 @@
 https://rostlab.org/owiki/index.php/Packages
 """
 
+from __future__ import print_function
+
 import os
 import re
 import sys
 
+if "-v" in sys.argv or "--version" in sys.argv:
+    print("v0.0.9")
+    sys.exit(0)
+
 if len(sys.argv) == 4:
     fasta_filename, tabular_filename, re_filename = sys.argv[1:]
 elif len(sys.argv) == 3:
@@ -138,7 +144,7 @@
 
 
 motifs = list(load_re(re_filename))
-print "Looking for %i NLS motifs" % len(motifs)
+print("Looking for %i NLS motifs" % len(motifs))
 
 if tabular_filename == "-":
     out_handle = sys.stdout
@@ -163,4 +169,4 @@
     count += 1
 if tabular_filename != "-":
     out_handle.close()
-print "Found %i NLS motifs in %i sequences" % (nls, count)
+print("Found %i NLS motifs in %i sequences" % (nls, count))
diff -r a3187d5724c4 -r 90cc8b7d2ee0 tools/predictnls/predictnls.xml
--- a/tools/predictnls/predictnls.xml	Wed May 10 12:46:01 2017 -0400
+++ b/tools/predictnls/predictnls.xml	Wed May 17 11:19:43 2017 -0400
@@ -1,5 +1,8 @@
-<tool id="predictnls" name="PredictNLS" version="0.0.8">
+<tool id="predictnls" name="PredictNLS" version="0.0.9">
     <description>Find nuclear localization signals (NLSs) in protein sequences</description>
+    <version_command>
+python $__tool_directory__/predictnls.py --version
+    </version_command>
     <command detect_errors="aggressive">
 python $__tool_directory__/predictnls.py '$fasta_file' '$tabular_file'
     </command>