# HG changeset patch # User peterjc # Date 1485958447 18000 # Node ID b096fdd5e2dba146204ea3d10a39a8e80c71b9af # Parent b1f2e5c222696f4f71293ab839dfe0bab9ae1ad2 v0.0.11 dependency packaging update diff -r b1f2e5c22269 -r b096fdd5e2db tools/nlstradamus/README.rst --- a/tools/nlstradamus/README.rst Thu May 21 10:52:40 2015 -0400 +++ b/tools/nlstradamus/README.rst Wed Feb 01 09:14:07 2017 -0500 @@ -1,7 +1,7 @@ Galaxy wrapper for NLStradamus v1.7 or v1.8 (C++ version) ========================================================= -This wrapper is copyright 2011-2015 by Peter Cock, The James Hutton Institute +This wrapper is copyright 2011-2017 by Peter Cock, The James Hutton Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. See the licence text below (MIT licence). @@ -79,6 +79,7 @@ v0.0.9 - Tool definition now embeds citation information. v0.0.10 - Reorder XML elements (internal change only). - Planemo for Tool Shed upload (``.shed.yml``, internal change only). +v0.0.11 - Update tool dependency definition to use cached URL ======= ====================================================================== @@ -96,12 +97,12 @@ Planemo commands (which requires you have set your Tool Shed access details in ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: - $ planemo shed_update --shed_target testtoolshed --check_diff ~/repositories/pico_galaxy/tools/nlstradamus/ + $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/nlstradamus/ ... or:: - $ planemo shed_update --shed_target toolshed --check_diff ~/repositories/pico_galaxy/tools/nlstradamus/ + $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/nlstradamus/ ... To just build and check the tar ball, use:: diff -r b1f2e5c22269 -r b096fdd5e2db tools/nlstradamus/tool_dependencies.xml --- a/tools/nlstradamus/tool_dependencies.xml Thu May 21 10:52:40 2015 -0400 +++ b/tools/nlstradamus/tool_dependencies.xml Wed Feb 01 09:14:07 2017 -0500 @@ -3,7 +3,8 @@ - http://www.moseslab.csb.utoronto.ca/NLStradamus/NLStradamus/NLStradamus.1.8.tar.gz + + https://depot.galaxyproject.org/software/NLStradamus/NLStradamus_1.8_src_all.tar.gz g++ NLStradamus.cpp -o NLStradamus -O3 NLStradamus$INSTALL_DIR/