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view tools/nlstradamus/tool_dependencies.xml @ 10:ef21d5033238 draft

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planemo upload for repository https://github.com/peterjc/pico_galaxy/tools/nlstradamus commit 724a5e90f907f083552c7e0dd3a2a53e59aa42f5-dirty
author peterjc
date Wed, 13 May 2015 06:05:16 -0400
parents 0967f6a0e13e
children b096fdd5e2db
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line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="NLStradamus" version="1.8">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://www.moseslab.csb.utoronto.ca/NLStradamus/NLStradamus/NLStradamus.1.8.tar.gz</action>
                <!-- Although v1.7 used a subfolder in the tar-ball, v1.8 did not -->
                <action type="shell_command">g++ NLStradamus.cpp -o NLStradamus -O3</action>
                <action type="move_file"><source>NLStradamus</source><destination>$INSTALL_DIR/</destination></action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
This downloads NLStradamus v1.8 from this folder,
http://www.moseslab.csb.utoronto.ca/NLStradamus/NLStradamus/

The C++ tool is compiled as described in the README_C.txt file, using g++, and included in the $PATH.

The older slower Perl implementation is not installed.
        </readme>
    </package>
</tool_dependency>