# HG changeset patch # User peterjc # Date 1366896436 14400 # Node ID e710b94464931357d1b14f8260b2614cad010ff0 # Parent 08be1b2b0bf62b5f27a1ededd118d10a0e6c1d78 Uploaded v0.0.19 preview 5, nicer output labels on datasets diff -r 08be1b2b0bf6 -r e710b9446493 tools/ncbi_blast_plus/ncbi_blast_plus.txt --- a/tools/ncbi_blast_plus/ncbi_blast_plus.txt Thu Apr 25 09:05:13 2013 -0400 +++ b/tools/ncbi_blast_plus/ncbi_blast_plus.txt Thu Apr 25 09:27:16 2013 -0400 @@ -94,9 +94,10 @@ v0.0.18 - Defensive quoting of filenames in case of spaces (where possible, BLAST+ handling of some mult-file arguments is problematic). v0.0.19 - Added wrappers for rpsblast and rpstblastn, and new blastdb_d.loc - for the domain databases they use (e.g. CDD). + for the domain databases they use (e.g. CDD, PFAM or SMART). - Correct case of exception regular expression (for error handling fall-back in case the return code is not set properly). + - Clearer naming of output files. Developers diff -r 08be1b2b0bf6 -r e710b9446493 tools/ncbi_blast_plus/ncbi_blastn_wrapper.xml --- a/tools/ncbi_blast_plus/ncbi_blastn_wrapper.xml Thu Apr 25 09:05:13 2013 -0400 +++ b/tools/ncbi_blast_plus/ncbi_blastn_wrapper.xml Thu Apr 25 09:27:16 2013 -0400 @@ -136,7 +136,7 @@ - + diff -r 08be1b2b0bf6 -r e710b9446493 tools/ncbi_blast_plus/ncbi_blastp_wrapper.xml --- a/tools/ncbi_blast_plus/ncbi_blastp_wrapper.xml Thu Apr 25 09:05:13 2013 -0400 +++ b/tools/ncbi_blast_plus/ncbi_blastp_wrapper.xml Thu Apr 25 09:27:16 2013 -0400 @@ -141,7 +141,7 @@ - + diff -r 08be1b2b0bf6 -r e710b9446493 tools/ncbi_blast_plus/ncbi_blastx_wrapper.xml --- a/tools/ncbi_blast_plus/ncbi_blastx_wrapper.xml Thu Apr 25 09:05:13 2013 -0400 +++ b/tools/ncbi_blast_plus/ncbi_blastx_wrapper.xml Thu Apr 25 09:27:16 2013 -0400 @@ -158,7 +158,7 @@ - + diff -r 08be1b2b0bf6 -r e710b9446493 tools/ncbi_blast_plus/ncbi_makeblastdb.xml --- a/tools/ncbi_blast_plus/ncbi_makeblastdb.xml Thu Apr 25 09:05:13 2013 -0400 +++ b/tools/ncbi_blast_plus/ncbi_makeblastdb.xml Thu Apr 25 09:27:16 2013 -0400 @@ -1,4 +1,4 @@ - + Make BLAST database makeblastdb @@ -95,7 +95,7 @@ - + diff -r 08be1b2b0bf6 -r e710b9446493 tools/ncbi_blast_plus/ncbi_rpsblast_wrapper.xml --- a/tools/ncbi_blast_plus/ncbi_rpsblast_wrapper.xml Thu Apr 25 09:05:13 2013 -0400 +++ b/tools/ncbi_blast_plus/ncbi_rpsblast_wrapper.xml Thu Apr 25 09:27:16 2013 -0400 @@ -113,7 +113,7 @@ - + diff -r 08be1b2b0bf6 -r e710b9446493 tools/ncbi_blast_plus/ncbi_rpstblastn_wrapper.xml --- a/tools/ncbi_blast_plus/ncbi_rpstblastn_wrapper.xml Thu Apr 25 09:05:13 2013 -0400 +++ b/tools/ncbi_blast_plus/ncbi_rpstblastn_wrapper.xml Thu Apr 25 09:27:16 2013 -0400 @@ -114,7 +114,7 @@ - + diff -r 08be1b2b0bf6 -r e710b9446493 tools/ncbi_blast_plus/ncbi_tblastn_wrapper.xml --- a/tools/ncbi_blast_plus/ncbi_tblastn_wrapper.xml Thu Apr 25 09:05:13 2013 -0400 +++ b/tools/ncbi_blast_plus/ncbi_tblastn_wrapper.xml Thu Apr 25 09:27:16 2013 -0400 @@ -158,7 +158,7 @@ - + diff -r 08be1b2b0bf6 -r e710b9446493 tools/ncbi_blast_plus/ncbi_tblastx_wrapper.xml --- a/tools/ncbi_blast_plus/ncbi_tblastx_wrapper.xml Thu Apr 25 09:05:13 2013 -0400 +++ b/tools/ncbi_blast_plus/ncbi_tblastx_wrapper.xml Thu Apr 25 09:27:16 2013 -0400 @@ -178,7 +178,7 @@ - +