# HG changeset patch
# User peterjc
# Date 1375895364 14400
# Node ID 949fa0294c0df8f6025b2bd6de33ef4993cb3a41
# Parent  5693417851ecfd132da5100ac1791984deb3841c
Uploaded v0.0.20pre16, depend on package_blast_plus_2_2_26

diff -r 5693417851ec -r 949fa0294c0d ncbi_blast_plus/README.rst
--- a/ncbi_blast_plus/README.rst	Tue Aug 06 12:04:54 2013 -0400
+++ b/ncbi_blast_plus/README.rst	Wed Aug 07 13:09:24 2013 -0400
@@ -115,7 +115,6 @@
         - Tweak dependency on blast_datatypes to also work on Test Tool Shed
         - Adopted standard MIT License.
         - Development moved to GitHub, https://github.com/peterjc/galaxy_blast
-        - Auto-installation uses the NCBI supplied pre-compiled binaries.
 ======= ======================================================================
 
 
diff -r 5693417851ec -r 949fa0294c0d ncbi_blast_plus/repository_dependencies.xml
--- a/ncbi_blast_plus/repository_dependencies.xml	Tue Aug 06 12:04:54 2013 -0400
+++ b/ncbi_blast_plus/repository_dependencies.xml	Wed Aug 07 13:09:24 2013 -0400
@@ -1,5 +1,4 @@
 <?xml version="1.0"?>
 <repositories description="This requires the BLAST datatype definitions (e.g. the BLAST XML format).">
-<!-- Revision 4:f9a7783ed7b6 on the main (and test) tool shed is v0.0.14 which added BLAST databases -->
-<repository changeset_revision="f9a7783ed7b6" name="blast_datatypes" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="a44a7a5456e1" name="blast_datatypes" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
 </repositories>
diff -r 5693417851ec -r 949fa0294c0d ncbi_blast_plus/tool_dependencies.xml
--- a/ncbi_blast_plus/tool_dependencies.xml	Tue Aug 06 12:04:54 2013 -0400
+++ b/ncbi_blast_plus/tool_dependencies.xml	Wed Aug 07 13:09:24 2013 -0400
@@ -1,33 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="blast+" version="2.2.26+">
-        <install version="1.0">
-            <actions>
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
-                </action>
-		<!-- arch under Linux 32bit includes some variants like i386 and i686, so use as default -->
-                <action type="shell_command">if [[ "$(uname)" == "Linux" ]]; then export FILENAME="ncbi-blast-2.2.26+-ia32-linux.tar.gz"; fi</action>
-		<action type="shell_command">if [[ "$(arch)" == "x86_64" ]]; then export FILENAME="ncbi-blast-2.2.26+-x64-linux.tar.gz"; fi</action>
-                <action type="shell_command">if [[ "$(uname)" == "Darwin" ]]; then export FILENAME="ncbi-blast-2.2.26+-universal-macosx.tar.gz"; fi</action>
-		<!-- now download and unzip it, assuming can't use $FILENAME in the Tool Shed action? -->
-		<action type="shell_command">wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/$FILENAME</action>
-		<action type="shell_command">tar -zxvf $FILENAME</action>
-                <!-- move the binaries to the installation directory which is now on the $PATH -->
-                <action type="move_directory_files">
-                    <source_directory>ncbi-blast-2.2.26+/bin</source_directory>
-                    <destination_directory>$INSTALL_DIR</destination_directory>
-                </action>
-            </actions>
-        </install>
-        <readme>
-Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X BLAST+
-binaries from the NCBI, which is faster than performing a local compliation,
-avoids any issues with build dependencies, and is more reproducible between
-installations as there is no variability from the compiler or library versions.
-
-For more details, see:
-http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
-        </readme>
+        <repository changeset_revision="733eee977fb8" name="package_blast_plus_2_2_26" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>