annotate test-data/tblastn_four_human_vs_rhodopsin.html @ 11:579acb6fb8a8 draft

Uploaded v0.0.20, preview 2. Uses a smaller test case than last upload.
author peterjc
date Mon, 29 Apr 2013 09:27:48 -0400
parents cf4903f5c81f
children 5ec998a3530c
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1 <HTML>
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2 <TITLE>BLAST Search Results</TITLE>
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3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
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4 <PRE>
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5
3
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6 <b>TBLASTN 2.2.26+</b>
0
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7
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8
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9 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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10 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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11
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12 Length=406
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13
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14 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
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15
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16 Length=1047
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17
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18
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19 ***** No hits found *****
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20
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21
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22
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23 Lambda K H
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24 0.347 0.182 0.684
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25
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26 Gapped
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27 Lambda K H
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28 0.299 0.0710 0.270
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29
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30 Effective search space used: 127710
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31
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32
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33 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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34 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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35
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36 Length=406
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37
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38 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
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39 cds
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40
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41 Length=1574
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42
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43
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44 ***** No hits found *****
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45
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46
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47
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48 Lambda K H
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49 0.347 0.182 0.684
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50
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51 Gapped
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52 Lambda K H
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53 0.299 0.0710 0.270
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54
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55 Effective search space used: 127710
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56
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57
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58 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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59 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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60
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61 Length=406
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62
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63 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
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64 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
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65
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66 Length=4301
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67
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68
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69 ***** No hits found *****
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70
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71
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72
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73 Lambda K H
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74 0.347 0.182 0.684
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75
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76 Gapped
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77 Lambda K H
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78 0.299 0.0710 0.270
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79
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80 Effective search space used: 127710
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81
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82
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83 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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84 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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85
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86 Length=406
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87
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88 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
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89 (RHO) mRNA, partial cds
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90
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91 Length=983
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92
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93
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94 ***** No hits found *****
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95
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96
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97
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98 Lambda K H
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99 0.347 0.182 0.684
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100
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101 Gapped
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102 Lambda K H
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peterjc
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103 0.299 0.0710 0.270
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104
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105 Effective search space used: 127710
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106
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107
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108 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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109 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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110
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111 Length=406
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112
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113 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
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114 rhodopsin, complete cds
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115
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116 Length=1047
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117
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118
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119 ***** No hits found *****
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120
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121
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122
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123 Lambda K H
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124 0.347 0.182 0.684
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125
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126 Gapped
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127 Lambda K H
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128 0.299 0.0710 0.270
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129
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130 Effective search space used: 127710
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131
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132
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133 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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134 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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135
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136 Length=406
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137
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138 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
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139 water form rod opsin, complete cds
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140
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141 Length=1344
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142
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143
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144 ***** No hits found *****
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145
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146
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147
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148 Lambda K H
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peterjc
parents:
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149 0.347 0.182 0.684
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parents:
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150
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151 Gapped
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peterjc
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152 Lambda K H
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peterjc
parents:
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153 0.299 0.0710 0.270
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154
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155 Effective search space used: 127710
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156
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157
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158 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
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159 GN=BMP2K PE=1 SV=2
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160
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161 Length=1161
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162
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163 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
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164
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165 Length=1047
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166
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167
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168 ***** No hits found *****
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parents:
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169
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parents:
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170
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171
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172 Lambda K H
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peterjc
parents:
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173 0.334 0.170 0.615
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parents:
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174
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175 Gapped
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peterjc
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176 Lambda K H
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peterjc
parents:
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177 0.299 0.0710 0.270
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parents:
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178
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179 Effective search space used: 370988
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180
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181
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182 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
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183 GN=BMP2K PE=1 SV=2
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184
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185 Length=1161
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186
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187 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
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188 cds
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189
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190 Length=1574
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191
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192
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193 ***** No hits found *****
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194
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195
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196
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peterjc
parents:
diff changeset
197 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
198 0.334 0.170 0.615
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
199
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
200 Gapped
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
201 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
202 0.299 0.0710 0.270
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
203
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
204 Effective search space used: 370988
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
205
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
206
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
207 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
208 GN=BMP2K PE=1 SV=2
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
209
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
210 Length=1161
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
211
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
212 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
213 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
214
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
215 Length=4301
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
216
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
217
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
218 ***** No hits found *****
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
219
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
220
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
221
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
222 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
223 0.334 0.170 0.615
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
224
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
225 Gapped
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
226 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
227 0.299 0.0710 0.270
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
228
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
229 Effective search space used: 370988
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
230
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
231
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
232 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
233 GN=BMP2K PE=1 SV=2
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
234
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
235 Length=1161
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
236
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
237 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
238 (RHO) mRNA, partial cds
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
239
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
240 Length=983
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
241
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
242
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
243 ***** No hits found *****
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
244
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
245
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
246
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
247 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
248 0.334 0.170 0.615
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
249
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
250 Gapped
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
251 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
252 0.299 0.0710 0.270
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
253
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
254 Effective search space used: 370988
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
255
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
256
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
257 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
258 GN=BMP2K PE=1 SV=2
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
259
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
260 Length=1161
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
261
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
262 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
263 rhodopsin, complete cds
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
264
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
265 Length=1047
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
266
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
267
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
268 ***** No hits found *****
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
269
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
270
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
271
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
272 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
273 0.334 0.170 0.615
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
274
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
275 Gapped
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
276 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
277 0.299 0.0710 0.270
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
278
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
279 Effective search space used: 370988
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
280
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
281
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
282 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
283 GN=BMP2K PE=1 SV=2
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
284
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
285 Length=1161
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
286
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
287 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
288 water form rod opsin, complete cds
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
289
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
290 Length=1344
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
291
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
292
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
293 ***** No hits found *****
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
294
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
295
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
296
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
297 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
298 0.334 0.170 0.615
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
299
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
300 Gapped
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
301 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
302 0.299 0.0710 0.270
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
303
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
304 Effective search space used: 370988
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
305
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
306
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
307 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
308 SV=4
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
309
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
310 Length=1382
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
311
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
312 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
313
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
314 Length=1047
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
315
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
316
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
317 ***** No hits found *****
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
318
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
319
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
320
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
321 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
322 0.346 0.180 0.700
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
323
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
324 Gapped
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
325 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
326 0.299 0.0710 0.270
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
327
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
328 Effective search space used: 441350
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
329
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
330
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
331 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
332 SV=4
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
333
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
334 Length=1382
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
335
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
336 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
337 cds
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
338
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
339 Length=1574
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
340
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
341
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
342 ***** No hits found *****
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
343
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
344
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
345
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
346 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
347 0.346 0.180 0.700
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
348
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
349 Gapped
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
350 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
351 0.299 0.0710 0.270
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
352
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
353 Effective search space used: 441350
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
354
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
355
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
356 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
357 SV=4
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
358
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
359 Length=1382
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
360
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
361 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
362 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
363
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
364 Length=4301
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
365
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
366
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
367 ***** No hits found *****
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
368
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
369
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
370
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
371 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
372 0.346 0.180 0.700
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
373
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
374 Gapped
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
375 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
376 0.299 0.0710 0.270
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
377
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
378 Effective search space used: 441350
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
379
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
380
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
381 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
382 SV=4
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
383
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
384 Length=1382
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
385
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
386 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
387 (RHO) mRNA, partial cds
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
388
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
389 Length=983
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
390
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
391
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
392 ***** No hits found *****
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
393
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
394
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
395
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
396 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
397 0.346 0.180 0.700
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
398
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
399 Gapped
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
400 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
401 0.299 0.0710 0.270
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
402
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
403 Effective search space used: 441350
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
404
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
405
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
406 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
407 SV=4
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
408
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
409 Length=1382
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
410
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
411 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
412 rhodopsin, complete cds
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
413
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
414 Length=1047
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
415
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
416
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
417 ***** No hits found *****
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
418
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
419
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
420
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
421 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
422 0.346 0.180 0.700
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
423
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
424 Gapped
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
425 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
426 0.299 0.0710 0.270
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
427
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
428 Effective search space used: 441350
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
429
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
430
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
431 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
432 SV=4
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
433
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
434 Length=1382
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
435
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
436 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
437 water form rod opsin, complete cds
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
438
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
439 Length=1344
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
440
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
441
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
442 ***** No hits found *****
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
443
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
444
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
445
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
446 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
447 0.346 0.180 0.700
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
448
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
449 Gapped
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
450 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
451 0.299 0.0710 0.270
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
452
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
453 Effective search space used: 441350
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
454
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
455
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
456 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
457
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
458 Length=348
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
459
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
460 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
461
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
462 Length=1047
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
463
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
464 <script src="blastResult.js"></script>
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
465 Score = 732 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
466 Identities = 336/348 (97%), Positives = 343/348 (99%), Gaps = 0/348 (0%)
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
467 Frame = +1
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
468
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
469 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
470 MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
471 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 180
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
472
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
473 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
474 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
475 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
476
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
477 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
478 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
479 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
480
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
481 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
482 EG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQES
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
483 Sbjct 541 EGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQES 720
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
484
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
485 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
486 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++I
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
487 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSI 900
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
488
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
489 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
490 YNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
491 Sbjct 901 YNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA 1044
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
492
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
493
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
494
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
495 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
496 0.351 0.182 0.707
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
497
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
498 Gapped
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
499 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
500 0.299 0.0710 0.270
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
501
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
502 Effective search space used: 109230
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
503
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
504
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
505 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
506
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
507 Length=348
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
508
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
509 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
510 cds
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
511
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
512 Length=1574
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
513
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
514 <script src="blastResult.js"></script>
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
515 Score = 646 bits (1489), Expect = 0.0, Method: Compositional matrix adjust.
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
516 Identities = 290/342 (85%), Positives = 320/342 (94%), Gaps = 1/342 (0%)
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
517 Frame = +3
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
518
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
519 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
520 MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLY
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
521 Sbjct 42 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLY 221
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
522
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
523 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
524 VT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLG
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
525 Sbjct 222 VTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLG 401
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
526
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
527 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
528 GEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIP
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
529 Sbjct 402 GEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIP 581
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
530
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
531 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
532 EG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQES
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
533 Sbjct 582 EGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQES 761
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
534
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
535 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
536 ATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++I
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
537 Sbjct 762 ATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSI 941
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
538
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
539 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE 341
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
540 YNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
541 Sbjct 942 YNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE 1067
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
542
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
543
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
544
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
545 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
546 0.351 0.182 0.707
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
547
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
548 Gapped
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
549 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
550 0.299 0.0710 0.270
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
551
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
552 Effective search space used: 109230
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
553
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
554
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
555 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
556
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
557 Length=348
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
558
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
559 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
560 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
561
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
562 Length=4301
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
563
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
564 <script src="blastResult.js"></script>
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
565 Score = 151 bits (342), Expect(2) = 1e-72, Method: Compositional matrix adjust.
3
cf4903f5c81f Uploaded v0.0.17
peterjc
parents: 0
diff changeset
566 Identities = 69/74 (93%), Positives = 73/74 (99%), Gaps = 0/74 (0%)
0
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
567 Frame = +3
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
568
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
569 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
570 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
571 Sbjct 3147 ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS 3326
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
572
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
573 Query 299 AIYNPVIYIMMNKQ 312
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
574 +IYNPVIYIMMNKQ
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
575 Sbjct 3327 SIYNPVIYIMMNKQ 3368
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
576
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
577
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
578 Score = 126 bits (284), Expect(2) = 1e-72, Method: Compositional matrix adjust.
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
579 Identities = 54/59 (92%), Positives = 57/59 (97%), Gaps = 0/59 (0%)
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
580 Frame = +2
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
581
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
582 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
583 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
584 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
585
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
586
3
cf4903f5c81f Uploaded v0.0.17
peterjc
parents: 0
diff changeset
587 Score = 229 bits (523), Expect = 9e-67, Method: Compositional matrix adjust.
cf4903f5c81f Uploaded v0.0.17
peterjc
parents: 0
diff changeset
588 Identities = 107/111 (96%), Positives = 109/111 (98%), Gaps = 0/111 (0%)
0
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
589 Frame = +1
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
590
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
591 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
592 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
593 Sbjct 1 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
594
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
595 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 121
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
596 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
597 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
598
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
599
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
600 Score = 122 bits (276), Expect = 1e-32, Method: Compositional matrix adjust.
3
cf4903f5c81f Uploaded v0.0.17
peterjc
parents: 0
diff changeset
601 Identities = 55/59 (93%), Positives = 56/59 (95%), Gaps = 0/59 (0%)
0
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
602 Frame = +3
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
603
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
604 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
605 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
606 Sbjct 1404 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR 1580
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
607
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
608
3
cf4903f5c81f Uploaded v0.0.17
peterjc
parents: 0
diff changeset
609 Score = 57.7 bits (125), Expect = 2e-12, Method: Compositional matrix adjust.
cf4903f5c81f Uploaded v0.0.17
peterjc
parents: 0
diff changeset
610 Identities = 23/26 (88%), Positives = 24/26 (92%), Gaps = 0/26 (0%)
0
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
611 Frame = +1
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
612
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
613 Query 312 QFRNCMLTTICCGKNPLGDDEASATV 337
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
614 QFRNCMLTT+CCGKNPLGDDEAS T
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
615 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
616
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
617
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
618
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
619 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
620 0.351 0.182 0.707
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
621
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
622 Gapped
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
623 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
624 0.299 0.0710 0.270
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
625
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
626 Effective search space used: 109230
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
627
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
628
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
629 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
630
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
631 Length=348
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
632
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
633 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
634 (RHO) mRNA, partial cds
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
635
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
636 Length=983
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
637
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
638 <script src="blastResult.js"></script>
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
639 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust.
3
cf4903f5c81f Uploaded v0.0.17
peterjc
parents: 0
diff changeset
640 Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%)
0
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
641 Frame = +1
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
642
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
643 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
644 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
645 Sbjct 1 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
646
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
647 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVV 130
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
648 PLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVV
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
649 Sbjct 181 PLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVV 360
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
650
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
651 Query 131 LAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGID 190
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
652 LAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGID
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
653 Sbjct 361 LAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGID 540
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
654
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
655 Query 191 YYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 250
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
656 YYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEV
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
657 Sbjct 541 YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 720
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
658
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
659 Query 251 TRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMN 310
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
660 TRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMN
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
661 Sbjct 721 TRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMN 900
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
662
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
663 Query 311 KQFRNCMLTTICCGKNPLGDDEASAT 336
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
664 KQFRNCMLTT+CCGKNPLGDDEAS T
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
665 Sbjct 901 KQFRNCMLTTLCCGKNPLGDDEASTT 978
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
666
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
667
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
668
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
669 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
670 0.351 0.182 0.707
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
671
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
672 Gapped
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
673 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
674 0.299 0.0710 0.270
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
675
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
676 Effective search space used: 109230
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
677
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
678
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
679 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
680
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
681 Length=348
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
682
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
683 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
684 rhodopsin, complete cds
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
685
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
686 Length=1047
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
687
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
688 <script src="blastResult.js"></script>
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
689 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
3
cf4903f5c81f Uploaded v0.0.17
peterjc
parents: 0
diff changeset
690 Identities = 325/348 (93%), Positives = 337/348 (97%), Gaps = 0/348 (0%)
0
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
691 Frame = +1
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
692
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
693 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
694 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
695 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 180
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
696
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
697 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
698 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
699 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
700
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
701 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
702 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
703 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
704
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
705 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
706 EG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQES
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
707 Sbjct 541 EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES 720
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
708
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
709 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
710 ATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
711 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV 900
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
712
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
713 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
714 YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
715 Sbjct 901 YNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 1044
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
716
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
717
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
718
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
719 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
720 0.351 0.182 0.707
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
721
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
722 Gapped
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
723 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
724 0.299 0.0710 0.270
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
725
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
726 Effective search space used: 109230
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
727
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
728
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
729 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
730
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
731 Length=348
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
732
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
733 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
734 water form rod opsin, complete cds
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
735
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
736 Length=1344
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
737
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
738 <script src="blastResult.js"></script>
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
739 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust.
3
cf4903f5c81f Uploaded v0.0.17
peterjc
parents: 0
diff changeset
740 Identities = 281/342 (82%), Positives = 311/342 (91%), Gaps = 1/342 (0%)
0
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
741 Frame = +2
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
742
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
743 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
744 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
745 Sbjct 23 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLY 202
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
746
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
747 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
748 VT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLG
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
749 Sbjct 203 VTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLG 382
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
750
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
751 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
752 GEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIP
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
753 Sbjct 383 GEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIP 562
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
754
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
755 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
756 EGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
757 Sbjct 563 EGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQES 742
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
758
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
759 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
760 TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
761 Sbjct 743 ETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSAL 922
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
762
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
763 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE 341
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
764 YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
765 Sbjct 923 YNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE 1048
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
766
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
767
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
768
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
769 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
770 0.351 0.182 0.707
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
771
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
772 Gapped
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
773 Lambda K H
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
774 0.299 0.0710 0.270
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
775
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
776 Effective search space used: 109230
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
777
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
778
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
779
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
780
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
781 Matrix: BLOSUM80
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
782 Gap Penalties: Existence: 10, Extension: 1
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
783 Neighboring words threshold: 14
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
784 Window for multiple hits: 25
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
785 </PRE>
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
786 </BODY>
b04f55ab182c Uploaded v0.0.12
peterjc
parents:
diff changeset
787 </HTML>