# HG changeset patch
# User peterjc
# Date 1414503696 14400
# Node ID 7cb6523cf4423f124ce0127e824fcb69d7d85324
# Parent  63470b69cc1d4f7a489359a7c38214e05f6573a1
Uploaded v0.0.3, get ps2pdf via dependency on GhostScript package

diff -r 63470b69cc1d -r 7cb6523cf442 tools/mummer/README.rst
--- a/tools/mummer/README.rst	Tue Oct 28 06:56:51 2014 -0400
+++ b/tools/mummer/README.rst	Tue Oct 28 09:41:36 2014 -0400
@@ -19,10 +19,9 @@
 ======================
 
 This should be straightforward, Galaxy should automatically download and install
-the MUMmer files.
+the MUMmer files, and GhostScript which provides the ``ps2pdf`` binary.
 
-It also needs the tools ``gnuplot`` and ``ps2pdf`` to be installed and on the
-system ``$PATH``.
+It also needs the tools ``gnuplot`` to be installed and on the system ``$PATH``.
 
 
 Manual Installation
@@ -61,6 +60,7 @@
 v0.0.1  - Initial public release.
 v0.0.2  - Correct typo in Tool identifier.
         - Include MUMmer citation in Galaxy XML markup.
+v0.0.3  - Install ``ps2pdf`` using Tool Shed's GhostScript package.
 ======= ======================================================================
 
 
diff -r 63470b69cc1d -r 7cb6523cf442 tools/mummer/mummer.py
--- a/tools/mummer/mummer.py	Tue Oct 28 06:56:51 2014 -0400
+++ b/tools/mummer/mummer.py	Tue Oct 28 09:41:36 2014 -0400
@@ -25,7 +25,8 @@
         stop_err("Error %i from: %s" % (return_code, cmd))
 
 if "-v" in sys.argv [1:]or "--version" in sys.argv[1:]:
-    print("MUMmer wrapper v0.0.1\n")
+    print("MUMmer wrapper v0.0.3\n")
+    # TODO - How to get a version string from the mummer binary?
     os.system("nucmer --version")
     os.system("promer --version")
     os.system("mummerplot --version")
diff -r 63470b69cc1d -r 7cb6523cf442 tools/mummer/mummer.xml
--- a/tools/mummer/mummer.xml	Tue Oct 28 06:56:51 2014 -0400
+++ b/tools/mummer/mummer.xml	Tue Oct 28 09:41:36 2014 -0400
@@ -1,8 +1,13 @@
-<tool id="mummerplot_wrapper" name="MUMmer dotplot" version="0.0.2">
+<tool id="mummerplot_wrapper" name="MUMmer dotplot" version="0.0.3">
     <description>Combine mummer/nucmer/promer with mummerplot</description>
     <requirements>
+            <!-- Needs ps2pdf from ghostscript -->      
             <requirement type="binary">ps2pdf</requirement>
+            <requirement type="package" version="9.10">ghostscript</requirement>
+            <!-- Needs mummer, nucmer, promer and mummerplot from MUMmer -->
+            <requirement type="binary">mummer</requirement>
             <requirement type="binary">nucmer</requirement>
+            <requirement type="binary">promer</requirement>
             <requirement type="binary">mummerplot</requirement>
             <requirement type="package" version="3.23">mummer</requirement>
     </requirements>
diff -r 63470b69cc1d -r 7cb6523cf442 tools/mummer/tool_dependencies.xml
--- a/tools/mummer/tool_dependencies.xml	Tue Oct 28 06:56:51 2014 -0400
+++ b/tools/mummer/tool_dependencies.xml	Tue Oct 28 09:41:36 2014 -0400
@@ -3,4 +3,7 @@
     <package name="mummer" version="3.23">
         <repository changeset_revision="020178be49ee" name="package_mummer_3_23" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
+    <package name="ghostscript" version="9.10">
+        <repository changeset_revision="9345d2740f0c" name="package_ghostscript_9_10" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
 </tool_dependency>