comparison mira.py @ 54:2bd1f1175fb2 draft

planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/datatypes/mira_datatypes commit 206259620376b322fc8ed99a6efdd3712f38764b

53:7f01823efdd5

"""
MiraAssemblyFormat class for the 'mira' format within Galaxy
"""

from galaxy.datatypes.data import Text


class MiraAssemblyFormat(Text):
    """MIRA Assembly Format  data"""
    file_ext = "mira"

    def sniff(self, filename):
        """Determines whether the file is a MIRA Assembly Format file.

        Note currently this only detects MIRA Assembly Format v2.0,
        as used in MIRA v3.9 and v4.0.

        It does not detect MIRA Assembly Format v1 as used in both

            h.close()
            return False
        return True

    def merge(split_files, output_file):
        """Merging multiple MIRA files is non-trivial and may not be possible..."""
        if len(split_files) == 1:
            # For one file only, use base class method (move/copy)
            return Text.merge(split_files, output_file)
        if not split_files:
            raise ValueError("Given no MIRA, %r, to merge into %s"

54:2bd1f1175fb2

"""MiraAssemblyFormat class for the 'mira' format within Galaxy."""

from galaxy.datatypes.data import Text


class MiraAssemblyFormat(Text):
    """MIRA Assembly Format  data."""

    file_ext = "mira"

    def sniff(self, filename):
        """Determine if the file is a MIRA Assembly Format file.

        Note currently this only detects MIRA Assembly Format v2.0,
        as used in MIRA v3.9 and v4.0.

        It does not detect MIRA Assembly Format v1 as used in both

            h.close()
            return False
        return True

    def merge(split_files, output_file):
        """Merge MIRA assembly files (not implemented).

        Merging multiple MIRA files is non-trivial and may not be possible...
        """
        if len(split_files) == 1:
            # For one file only, use base class method (move/copy)
            return Text.merge(split_files, output_file)
        if not split_files:
            raise ValueError("Given no MIRA, %r, to merge into %s"